BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896308
Length=2217
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36080.1 | Symbols: | phosphotransferases, alcohol group as... 628 5e-179
AT2G17930.1 | Symbols: | Phosphatidylinositol 3- and 4-kinase ... 628 5e-179
> AT4G36080.1 | Symbols: | phosphotransferases, alcohol group
as acceptor;binding;inositol or phosphatidylinositol kinases
| chr4:17059824-17077982 REVERSE LENGTH=12031
Length=12031
Score = 628 bits (340), Expect = 5e-179
Identities = 955/1234 (77%), Gaps = 113/1234 (9%)
Strand=Plus/Plus
Query 1069 TTTGTTGAAAACAGT-TGCCGTCGTTTTGTGGTTATATTGCCTGTTGACTGTTCCTCCTC 1127
||||||| ||||| | || || | ||||| |||| |||| || |||| | | || ||
Sbjct 3295 TTTGTTGTAAACA-TATGTCGGCATTTTGCAATTATTTTGCATGGGGACTATACTTCGTC 3353
Query 1128 AAATGCATCAACTAGTAG-TAATTCAATTGGCGGTTCTGTGATTTCGGCAAGTT-CAAGG 1185
|| | || |||||| | | | || |||| |||||| ||||||| |||||| ||| |
Sbjct 3354 GTATACTTCCACTAGT-GCTGGTCCACTTGGGGGTTCTTTGATTTCAACAAGTTCCAA-G 3411
Query 1186 TCCAAGAGTAGTCAATC-ATCTAATTCAAAGCAGTTAGATCCTTTGATATTATTAGACGC 1244
|||||| || | || | ||| || ||| ||| | ||||| || ||||| ||||| ||
Sbjct 3412 CCCAAGAATAATTGGTCTACCTACTT-AAAACAGCTGGATCCCTTAATATTTTTAGATGC 3470
Query 1245 GCTGGTGGATATGCTTGCAGATGAAAACCGGGTCCACT-CCAAAGCTG--CT--C-T-G- 1296
|| || ||| ||||||||||||||||| || |||| | ||||||||| || | | |
Sbjct 3471 TCTTGTTGATGTGCTTGCAGATGAAAACAGGCTCCA-TGCCAAAGCTGCTCTGACTTCGT 3529
Query 1297 --AATGTGTTTTCTGAAACACT-CTCGATT-CATACTCATGTCAAACATGCTGATGTGCT 1352
||||||||| ||||||| || || | || | | ||| | |||||||||||||||||||
Sbjct 3530 TAAATGTGTTTGCTGAAACTCTGCT-G-TTCCTTGCTCGTATCAAACATGCTGATGTGCT 3587
Query 1353 GATAGCTAGGGGTGGTCACAATGCCTCCGTGATTGTCTCGAGCCCTTCTACAAATTCAGT 1412
||| |||||||||| ||||| ||| || |||||||||| || |||||||||||| | ||
Sbjct 3588 GATGGCTAGGGGTGCTCACAGTGCATCTATGATTGTCTCCAGTCCTTCTACAAATCCGGT 3647
Query 1413 GTATTCGTCCCATCCAAGTGTGCGAATAACAGCGTTTGAACAAC---TA---------TT 1460
||||| |||||||||||||||||||| ||| ||||||||||| || ||
Sbjct 3648 ATATTCACCCCATCCAAGTGTGCGAATACCAGTGTTTGAACAACTTTTACCTCGGTTGTT 3707
Query 1461 GCATGGCTCTTATGGGAGCACTTGGCAAGCGCAGGTGGGAGGGGT--T---A-T-GG-GC 1512
|||| ||| |||||||||||| ||||||||||| ||||||| || | | | || ||
Sbjct 3708 GCATTGCTGTTATGGGAGCACATGGCAAGCGCAAATGGGAGGAGTAATGGGATTAGGTGC 3767
Query 1513 G-T-G--GGAAAAGTGAATGTTGAATCATTATGTTAT-TTTCAAGTAAAAATAATGCGTG 1567
| | | || ||||||||||||||| ||||||| | | |||||||||||||| | ||||
Sbjct 3768 GCTGGTAGGGAAAGTGAATGTTGAAACATTATG-TCTGTTTCAAGTAAAAATTGTACGTG 3826
Query 1568 GTCTGGT-TGAGGT-----TTTGGC-TCCTGTTTACGCTAGCAAAGAGCTAA-AAGAGAG 1619
||||||| | | || ||| ||||||||| ||||||||||||| || | ||||
Sbjct 3827 GTCTGGTCT-ATGTCCAAAAGAGGCTTCCTGTTTATGCTAGCAAAGAGC-AAGACGAGAC 3884
Query 1620 GAGTCAGGTTCTTATGCAGATTCTAGCTAGTCATGTGGTTAATAATGTTGACGAAGCAAA 1679
|||||||||||||| ||||||||| || | ||||||||||||||||||||||||||
Sbjct 3885 AAGTCAGGTTCTTATACAGATTCTA---AG--A-GTGGTTAATAATGTTGACGAAGCAAA 3938
Query 1680 CAGCGAAGCACGTAGAAAAAGCTTTCAAGATGTTATAGAATATCTTGCTAC--A-TGGTT 1736
|| || || || ||| |||||||||||||||| |||||||||||||||| | | |||
Sbjct 3939 CAATGATGCGCGCAGACAAAGCTTTCAAGATGTGGTAGAATATCTTGCTACTGAATTGTT 3998
Query 1737 -A-TTG-AAT-CGTA-A-CGCA-T-AC-A----T---C-G--CTG-CA-GT--TTT-GGC 1772
| || ||| | | | | || | | | | | | ||| | | ||| |||
Sbjct 3999 CAATTCTAATGCATCCATCACAGTGAGGAAAAATGTTCAGAACTGTCTTGCACTTTTGGC 4058
Query 1773 TAGCCAAACTGGAAGTGAGGTAACCGAGTTGCTTGAGCCTTCGTACCAAC-TATTGCTGC 1831
||||| ||||| ||||| ||| | || |||||||||||| ||||| | | |||||||
Sbjct 4059 TAGCCGGACTGGTAGTGAAGTATCTGAACTGCTTGAGCCTTTATACCAGCCT-TTGCTGC 4117
Query 1832 AGCCACTTATACTGTGTCCACTCCGATGCAC-GACAGTTGAACAACAGGTTGGAACGTTT 1890
||||||||||| || ||||||| |||| || |||| |||| |||||||||||||| | |
Sbjct 4118 AGCCACTTATAATGCGTCCACTTCGAT-CAAAGACAATTGATCAACAGGTTGGAAC-TGT 4175
Query 1891 G-CAGCTCTGA-TTTTCTGTGTGGCATTGAAGcccccccTTCTAAAAGTGACTCCAGAGC 1948
| ||||||||| |||| ||| | ||| ||| ||||||||||||||| ||||||||||||
Sbjct 4176 GACAGCTCTGAATTTT-TGTTTAGCACTGAGGCCCCCCCTTCTAAAGGTGACTCCAGAGT 4234
Query 1949 TGGTTAACTTTCT-GCAAGAAGCATTACAAATTGATGAGGCTGATGAAACTGTATGGGCT 2007
||||||| ||||| ||||||||| |||||||| | ||||||||||||| || ||||||||
Sbjct 4235 TGGTTAA-TTTCTTGCAAGAAGCGTTACAAATAGCTGAGGCTGATGAAGCTTTATGGGCT 4293
Query 2008 GTAAAATTGATGAATCCTCAAGTGCTTAGATCGTTGAACAGAGTTCGAACAGCTTGTATT 2067
|| || ||||||| |||| |||| |||| ||| ||||||||| |||||||||||||||||
Sbjct 4294 GTGAAGTTGATGAGTCCTAAAGTCCTTACATCATTGAACAGACTTCGAACAGCTTGTATT 4353
Query 2068 GAGTTTCTGAGCACAACTATAGCATGGGTTAA-TTTCCGAA-TGCAAACTTATACTGAAG 2125
||| ||||| |||||||||| || |||| | | |||| ||| | |||| | | | ||||
Sbjct 4354 GAGATTCTGTGCACAACTATGGCTTGGGCTGACTTTC-GAACT-CAAAGTCACAATGAAC 4411
Query 2126 TACCTGCCAAGGTAAATTCCATGTTTTTCAAGTCTCT-AACATGTAGAG-ATCCAGATCA 2183
||| ||| ||| ||| |||||||||||||||||| || ||| ||| ||| | ||||| |
Sbjct 4412 TACGTGCGAAGATAATTTCCATGTTTTTCAAGTC-CTTAACGTGTCGAGCA-CCAGA--A 4467
Query 2184 CATCGTGGCGGTTGCTAAGGAGGGTTTAAGACAG 2217
|| ||| | ||||| |||||||| |||||||||
Sbjct 4468 -ATTGTGACCGTTGCCAAGGAGGGGTTAAGACAG 4500
Score = 187 bits (101), Expect = 4e-46
Identities = 138/155 (89%), Gaps = 6/155 (4%)
Strand=Plus/Plus
Query 88 AAGGAACTCTTAGACTCACTAAAGCATGTACTTGGGACGGATTTCAAGAGAAGCTTATTT 147
|||||||| |||| ||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1252 AAGGAACTATTAGTCTCACTAAAGCATGTACTTGGGACGGATTTCAAGAGAGGTTTATTT 1311
Query 148 CCTCTTATTGACACTCTTTCAGTTGAGAGGGTTCTTGTTGGAACTGGGG-GAGCATG-TT 205
||||||||||||||||||| | ||||||||||| |||||||| |||| ||||||| ||
Sbjct 1312 CCTCTTATTGACACTCTTTTGGAAGAGAGGGTTCTAGTTGGAAC-GGGGCGAGCATGCTT 1370
Query 206 GTGAGTCTTTGATG-CCTTTGGCTTTCAGCCTACT 239
||||||||||| | ||| |||||| |||||||||
Sbjct 1371 -TGAGTCTTTGA-GACCTCTGGCTTACAGCCTACT 1403
> AT2G17930.1 | Symbols: | Phosphatidylinositol 3- and 4-kinase
family protein with FAT domain | chr2:7784288-7802230 REVERSE
LENGTH=11744
Length=11744
Score = 628 bits (340), Expect = 5e-179
Identities = 611/733 (83%), Gaps = 53/733 (7%)
Strand=Plus/Plus
Query 1069 TTTGTTGAAAACAGT-TGCCGTCGTTTTGTGGTTATATTGCCTGTTGACTGTTCCTCCTC 1127
|||||||| |||| | ||||| | ||||| | |||| |||| |||||||| | |||||||
Sbjct 2944 TTTGTTGAGAACA-TCTGCCGGCATTTTGCGATTATTTTGCATGTTGACTATACCTCCTC 3002
Query 1128 AAATGCATCAACTAGTAGTAATTCAATTGGCGGTTCTGTGATTTCGGCAAGTTCAAGGTC 1187
||||||||||||||||| || |||| | || |||||||||||||| ||||||| || ||
Sbjct 3003 AAATGCATCAACTAGTACTAGTTCACTCGGTGGTTCTGTGATTTCAACAAGTTCCAGATC 3062
Query 1188 CAAGAGTAGTCAATCATCTAATTCAAAGCAGTTAGATCCTTTGATATTATTAGACGCGCT 1247
|||||||| |||||||||||||| |||||||||||||||||| ||||| || || || ||
Sbjct 3063 CAAGAGTAATCAATCATCTAATTTAAAGCAGTTAGATCCTTTAATATTTTTGGATGCACT 3122
Query 1248 GGTGGATATGCTTGCAGATGAAAACCGGGTCCACTCCAAAGCTGCTCTGAAT--G----- 1300
||| ||| ||||||||||||||||| || ||||| ||||||||||||||||| |
Sbjct 3123 GGTCGATGTGCTTGCAGATGAAAACAGGCTCCACGCCAAAGCTGCTCTGAATGCGTTAAA 3182
Query 1301 TGT-TTT-CTGAAACACTCTCGATTCAT-ACTCATGTCAAACATGCTGATGTGCTGATAG 1357
||| ||| |||||||||| | | ||| | ||| ||||||||||||||||||| |||| |
Sbjct 3183 TGTGTTTGCTGAAACACTTTTG-TTCCTCGCTCGTGTCAAACATGCTGATGTGTTGATGG 3241
Query 1358 CTAGGGGTGGTCACAATGCCTCCGTGATTGTCTCGAGCCCTTCTACAAATTCAGTGTATT 1417
||||||||||||||||||||||| ||||||||||||| |||||||||||| |||| ||||
Sbjct 3242 CTAGGGGTGGTCACAATGCCTCCATGATTGTCTCGAGTCCTTCTACAAATCCAGTATATT 3301
Query 1418 CGTCCCATCCAAGTGTGCGAATAACAGCGTTTGAACAACTATTG---C-A----T----G 1465
| |||||||||||||||||||| ||| |||||||||||| ||| | | | |
Sbjct 3302 CACCCCATCCAAGTGTGCGAATACCAGTGTTTGAACAACTTTTGCCTCGACTTTTACACG 3361
Query 1466 GCTCTTATGGGAGCACTTGGCAAGCGCAGGTGGGAGGGGTTA------T-GG-GC----G 1513
||| |||||||||||| |||||||||||| |||||||||||| | || || |
Sbjct 3362 GCTGTTATGGGAGCACATGGCAAGCGCAGATGGGAGGGGTTATGGGGTTAGGTGCATTGG 3421
Query 1514 TGGGAAAAGTGAATGTTGAATCATTATGTTATTTTCAAGTAAAAATAATGCGTGGTCTGG 1573
|||| ||||||||||||||| ||||||||||||| |||||||| || | ||||||||||
Sbjct 3422 TGGGGAAAGTGAATGTTGAAACATTATGTTATTTCCAAGTAAAGATTGTTCGTGGTCTGG 3481
Query 1574 TTGAGGTTTT-----GGC-TCCTGTTTACGCTAGCAAAGAGCTAA-AAGAGAGGAGTCAG 1626
|| | ||||| ||| ||||||||| ||||||||||||| || |||||| ||||||
Sbjct 3482 TTTATGTTTTAAAGAGGCTTCCTGTTTATGCTAGCAAAGAGC-AAGAAGAGACAAGTCAG 3540
Query 1627 GTTCTTATGCAGATTCTAGCTAGTCATGTGGTTAATAATGTTGACGAAGCAAACAGCGAA 1686
|| ||||||||||||||| | | |||||||||||||||||||||||||||||| |||
Sbjct 3541 GTACTTATGCAGATTCTA-C--G---TGTGGTTAATAATGTTGACGAAGCAAACAGTGAA 3594
Query 1687 GCACGTAGAAAAAGCTTTCAAGATGTTATAGAATATCTTGCTACATG-GTTATTGAATCG 1745
|| |||||||||||||||||||||||| ||||||||||||| ||| | |||||| ||||
Sbjct 3595 GCGCGTAGAAAAAGCTTTCAAGATGTTGTAGAATATCTTGCCACA-GAGTTATTCAATCC 3653
Query 1746 TAACGCATACATC 1758
|||||||| ||||
Sbjct 3654 TAACGCATCCATC 3666
Score = 556 bits (301), Expect = 2e-157
Identities = 437/502 (87%), Gaps = 12/502 (2%)
Strand=Plus/Plus
Query 422 CTCAGGGGATGCACTCACAAGCTCTAGCTTCACAATCATCTGTTCCGCTGGGTTTTAAAG 481
||||||||||| || | |||||||| | |||||||||||||| ||||| |||||||||||
Sbjct 1514 CTCAGGGGATGAACCCTCAAGCTCTTGTTTCACAATCATCTGCTCCGCAGGGTTTTAAAG 1573
Query 482 GAATGAGAGAAGATGAGGTCTGGAAAGCCTATGGTGCTTTAAGGAGTGGTGTCCACTGCT 541
||||||||||||||||||| |||||||| | ||||| ||||| |||||||||||||||||
Sbjct 1574 GAATGAGAGAAGATGAGGTGTGGAAAGCTTCTGGTGTTTTAAAGAGTGGTGTCCACTGCT 1633
Query 542 TAGCTCTCTTCAAAGGAAAGGATGAGGTGAAGGAAATGCTTAATTCGTT-CTCCGAGTTT 600
||||||||||||||| ||||||||||| ||||||||||| ||| | || |||| | ||
Sbjct 1634 TAGCTCTCTTCAAAGAAAAGGATGAGGAAAAGGAAATGCTGAAT-CTTTTCTCCCAAATT 1692
Query 601 CTTGCTATTATGGAACCTCT-GTATCTGGTGGACATGTTCTCTTTATGCATGCCAGGGCT 659
||||||||||||||||||| | |||| ||||||||||||| ||||||||||||| |||
Sbjct 1693 CTTGCTATTATGGAACCTCGAG-ATCTAATGGACATGTTCTCGTTATGCATGCCAGAGCT 1751
Query 660 TTTTGACAGCCTGATATA-CAATAAACAACTGGTTCAAATATTTGCTGAACTTCGGCAAG 718
|||||| ||| |||| || |||||| ||||||||||| |||||||| | ||| | |||||
Sbjct 1752 TTTTGAGAGCATGAT-TAACAATAACCAACTGGTTCAGATATTTGCCGCACTCCTGCAAG 1810
Query 719 TTCCCAAA-TTATACAAGCCATTTTCAGATGGTCTGATTAGCTTACTAGTAAGCATCAAA 777
||||||| || |||||||||||| |||||| | |||||| |||||||| |||| ||||
Sbjct 1811 CTCCCAAAGTT-TACAAGCCATTTGCAGATGTTTTGATTAATTTACTAGTTAGCAGCAAA 1869
Query 778 CTTGATGTTCTGAAGAATCCAGATT-ATGGTGCAGCTAAACTAATTTTGCATTTGTTTAT 836
||||||||||||||||||||||||| | | |||| |||||||| |||||||| ||||||
Sbjct 1870 CTTGATGTTCTGAAGAATCCAGATTCA-GCTGCAACTAAACTAGTTTTGCATCTGTTTAG 1928
Query 837 ATGCATCCTTGGGGATGAT-ACCAAAACACAATCTGATATCGAAAGAATATTACAGCACC 895
||||||| |||||| || | |||||||||| ||||||| | |||||||||||||||||||
Sbjct 1929 ATGCATCTTTGGGGCTG-TCACCAAAACACCATCTGATTTTGAAAGAATATTACAGCACC 1987
Query 896 ACGAGCTTGTTATTATGGAAGT 917
||| || |||||||||||||||
Sbjct 1988 ACGTGCCTGTTATTATGGAAGT 2009
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109989394095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5