BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896317
Length=1950
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03450.1 | Symbols: PAP9, ATPAP9 | purple acid phosphatase 9... 3062 0.0
> AT2G03450.1 | Symbols: PAP9, ATPAP9 | purple acid phosphatase
9 | chr2:1041388-1043667 FORWARD LENGTH=2194
Length=2194
Score = 3062 bits (1658), Expect = 0.0
Identities = 1853/1949 (95%), Gaps = 5/1949 (0%)
Strand=Plus/Plus
Query 6 CGCCGTTTACTCTCTGGTCTTCTTCTTCCTCTTAATCACCTCTGTTTATTCCAAAGTCAC 65
|||||||||| |||| |||||||||||||||||||| |||||||||||||||||| |||
Sbjct 149 CGCCGTTTACACTCTCTTCTTCTTCTTCCTCTTAATCTCCTCTGTTTATTCCAAAGCCAC 208
Query 66 AATTTCAATCTCTCCACAAACCTTAAACCGAACCGGCGACATAGTCGTGATCAAATGGTC 125
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 209 GATTTCAATCTCTCCCCAAACCTTAAACCGATCCGGCGACATAGTCGTGATCAAATGGTC 268
Query 126 CGGCGTCGAGTCACCGTCCGATCTCGATTGGTTAGGAATCTACTCACCACCGGACTCTCC 185
||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 269 CGGCGTCGAATCACCGTCCGATCTCGACTGGTTAGGAATCTACTCGCCACCGGACTCTCC 328
Query 186 TCACGATCACTTCATCGGCTACAAATTCCTCTCCGATTCACCCACGTGGCAATCCGGGTC 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 TCACGATCACTTCATCGGCTACAAATTCCTCTCCGATTCACCCACGTGGCAATCCGGGTC 388
Query 246 GGGTTCAATTTCACTTCCCTTAACCAATCTCCGATCAAATTACACTTTCCGGATCTTCCA 305
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 389 GGGTTCGATTTCACTTCCCTTAACCAATCTCCGATCAAATTACACTTTCCGGATCTTTCA 448
Query 306 TTGGACCCAATCCGAAATCAACCCGAAACACAAAGACCATGATCACAATCCCTTACCCGG 365
|||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||
Sbjct 449 TTGGACCCAATCCGAAATAAACCCGAAACACCAAGACCATGATCACAATCCTTTACCCGG 508
Query 366 AACTCGTCATCTCTTAACCGAATCAAACCAGTTAAATTTCCGGTTCGCCGTTAACCGACC 425
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 509 AACTCGTCATCTCTTAACCGAATCAAACCAGTTAAATTTCCGGTTCGCTGTTAACCGACC 568
Query 426 GGAGCAGATTCATTTAAGTTACACAGATAATATCAACGAGATGAGAGT-GATGTTCGTAA 484
|||||||||||||||||||||||||||||| ||||||||||||||||| | |||| ||||
Sbjct 569 GGAGCAGATTCATTTAAGTTACACAGATAACATCAACGAGATGAGAGTAG-TGTTTGTAA 627
Query 485 CCGGAGATGGAGAAGAACGAGAAGCTCGATACGGCGAGGTTAAGGGCAAGCTCGATAACA 544
|||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||
Sbjct 628 CCGGAGATGGAGAAGAACGAGAAGCTCGCTACGGTGAGGTTAAGGACAAGCTCGATAACA 687
Query 545 TAGCGGTGGCGCGTGGGGTTAGGTACGAGAGAGAACATATGTGTCACGCGCCGGCGAATT 604
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 688 TAGCGGTGGCGCGTGGAGTTAGGTACGAGATAGAACATATGTGTCACGCGCCGGCGAATT 747
Query 605 CTACAATCGGATGGAGAGATCCAGGTTGGATATTTGATTCCGTGATGAAGAATCTGAAAC 664
||||| |||||||||||||||||||||||| ||| ||| |||||||||||||||| ||||
Sbjct 748 CTACAGTCGGATGGAGAGATCCAGGTTGGACATTCGATGCCGTGATGAAGAATCTAAAAC 807
Query 665 AAGGGCTTAAGTATTATTATCAGGTTGGGAGTGATTTAAAAGGATGGAGTGAGATTCATA 724
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 AAGGGATTAGGTATTATTATCAGGTTGGGAGTGATTTAAAAGGATGGAGTGAGATTCATA 867
Query 725 GCTTTGTTTCAAGAAATGAGCATTCAGAAGAAACTTTAGCTTTCATGTTTGGAGATATGG 784
|||||||||| |||||||| |||||||||||| ||||||||||||||||| |||||||
Sbjct 868 GCTTTGTTTCTCGAAATGAGGGTTCAGAAGAAACATTAGCTTTCATGTTTGGTGATATGG 927
Query 785 GATGTTCTACACCTTATAGAACATTTATCCGTGGAGAAGAAGAAAGTTTATCAACTGTGA 844
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 928 GATGTTATACACCTTATACAACATTTATCCGTGGAGAAGAAGAAAGTTTATCAACTGTGA 987
Query 845 AATGGATTTTAAGAGACATTGAAGCTTTAGGTAATGATAAGCCTGCGATTGTATCGCATA 904
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||
Sbjct 988 AATGGATTTTAAGAGACATTGAAGCTTTAGGTGATGATAAGCCTGTGATTGTATCACATA 1047
Query 905 TCGGAGATTTAAGTTATGCGCGAGGTTACTCGTGGATTTGGGATGAGTTCTTTGCTCAGA 964
|||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1048 TCGGAGATATAAGTTATGCACGAGGTTACTCGTGGATTTGGGATGAGTTCTTTACTCAGA 1107
Query 965 TTGAGCCTATTGCTTCTAAAGTGCCTTACCATGTTTGTATTGGTAACCATGAGTATGATT 1024
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1108 TTGAGCCTATTGCTTCTAAAGTGCCTTACCATGTATGTATTGGTAACCATGAGTATGATT 1167
Query 1025 GGCCTATGCAGCCTTGGAAACCAGATTGGGCTGCTTATGTTTATGGTAAAGATAGTGGTG 1084
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 GGCCTAACCAGCCTTGGAAACCAGATTGGGCTGCTTATGTTTATGGTAAAGATAGTGGTG 1227
Query 1085 GTGAATGTGGTGTACAGTATAGTGTTAAGTTTAACATGCCTGGTAATTCATCGGAAGCTA 1144
||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1228 GTGAATGTGGTGTACCGTATAGTGTTAAGTTCAACATGCCTGGTAATTCAACGGAAGCTA 1287
Query 1145 CGGGTATGGTTAAGGGACCTCAAACTCGGAACCTTTACTATTCTTATGATATGGGTTCGG 1204
| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1288 CTGGTATGGTTAAGGGACCTCAAAGTCGGAACCTTTACTATTCTTATGATATGGGTTCTG 1347
Query 1205 TTCATTTCGTTTATATTTCGACAGAGACGGATTTTCTTAAAGGTGGGAAGCAGTATAGTT 1264
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1348 TTCATTTCGTTTATATTTCGACAGAGACTGATTTTCTTAAAGGTGGGAAGCAGTATAGTT 1407
Query 1265 TTTTGAAGAGTGATTTAGAGTCTGTTAATAGGAGCAAGACACCGTTTGTTGTTGTACAAG 1324
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1408 TTTTGAAGAGTGATTTGGAGTCTGTTAATAGGAGTAAGACACCGTTTGTTGTTGTCCAAG 1467
Query 1325 GGCATAGACCGATGTACACTACAAGTAGGAAGATAAGAGACGCTGCGATAAGACAGAGGA 1384
|||||||||| ||||||||||| ||||||||||| ||||||||||| |||||| ||| ||
Sbjct 1468 GGCATAGACCTATGTACACTACGAGTAGGAAGATCAGAGACGCTGCTATAAGAGAGAAGA 1527
Query 1385 TGATCGAGCATTTGGAACCGATGTTTGTGGAGAACAATGTGACTGTTGCTTTATGGGGAC 1444
|||||||||||||||||||| |||| ||| ||||||||||||| ||||||||||||||||
Sbjct 1528 TGATCGAGCATTTGGAACCGTTGTTAGTGAAGAACAATGTGACGGTTGCTTTATGGGGAC 1587
Query 1445 ATGTACATAGATACGAAAGGTTTTGCCCGATTAGTAACAATACTTGTGGTGAACGTTGGC 1504
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1588 ATGTACATAGATATGAAAGGTTTTGTGCGATTAGTAACAATACTTGTGGTGAACGTTGGC 1647
Query 1505 AAGGAAACCCTGTTCATCTTGTGATTGGCATGGCTGGAAAAGACACACAACCGATTTGGG 1564
||||||| || ||||||||||||||||| ||||||||||||||| |||||||||| ||||
Sbjct 1648 AAGGAAATCCAGTTCATCTTGTGATTGGTATGGCTGGAAAAGACTCACAACCGATGTGGG 1707
Query 1565 AACCGAGACCTAATCACCAGGATGTCCCGATCTTTCCTCAGCCTGCTAACTCAATGTACC 1624
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1708 AACCGAGAGCTAATCACGAGGATGTCCCGATCTTTCCTCAGCCTGCTAACTCAATGTACC 1767
Query 1625 GCGGAGGCGAGTTTGGGTACACTCGTTTGGTTGCTAATAAAGAAAGACTCACTCTTTCGT 1684
| ||||||||||||||||||| |||||||||||||||||| |||||||| |||||||| |
Sbjct 1768 GTGGAGGCGAGTTTGGGTACATTCGTTTGGTTGCTAATAAGGAAAGACTTACTCTTTCTT 1827
Query 1685 ATGTGGGAAACCACGACGGAGAAGTTCATGATGTTGTTGAGATTTTGGCTTCAGGGGAAG 1744
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1828 ATGTGGGAAACCATGACGGAGAAGTTCATGATGTTGTTGAGATTTTGGCTTCTGGGGAAG 1887
Query 1745 TTATTAGCGGTAGTGATGATGGTA--AA-GACTCAAACTTTGGATCTGAATCTGACTTTG 1801
|||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 1888 TTATTAGCGGTAGTGATGATGGTACTAAAGACTCAAACTTTGGATCAGAATCTGACTTTG 1947
Query 1802 CAGTCTTGTGGTACATTGAAGGAGCAAGTGTGATGGTTGTGGGAGTGATTTTGGGGTATT 1861
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1948 CAGTCTTGTGGTACATTGAAGGAGCAAGTGTGATGGTTGTGGGAGTGATTTTTGGGTACT 2007
Query 1862 TTGTCGGtttttttAGTCGTAAAAAGAAAGAATCAGGAGTTGGATCATCTAATAGTAGTT 1921
||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 2008 TTGTCGGTTTTCTTAGTCGTAAAAAGAAAGAATCTGGAGTTGGATCATCTAATCGTAGTT 2067
Query 1922 GGATCCAAGTGAAAAACGAGGAGACATGA 1950
|||||||||||||||||||||||||||||
Sbjct 2068 GGATCCAAGTGAAAAACGAGGAGACATGA 2096
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96585848580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5