BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896320
Length=1860
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03480.1 | Symbols: QUL2 | QUASIMODO2 LIKE 2 | chr2:1050938-... 2098 0.0
AT1G13860.4 | Symbols: QUL1 | QUASIMODO2 LIKE 1 | chr1:4743309-... 1718 0.0
> AT2G03480.1 | Symbols: QUL2 | QUASIMODO2 LIKE 2 | chr2:1050938-1054478
FORWARD LENGTH=2444
Length=2444
Score = 2098 bits (1136), Expect = 0.0
Identities = 1230/1276 (96%), Gaps = 4/1276 (0%)
Strand=Plus/Plus
Query 1 ATGAGAAGTTCTTGGTACAAGAGTGTTGCCTCGGTTTTTGGTCTTAGACCACGGATCAGA 60
|||||| |||||||||||||||||||| |||| ||||||||||| |||||||||||||||
Sbjct 321 ATGAGAGGTTCTTGGTACAAGAGTGTTTCCTCTGTTTTTGGTCTCAGACCACGGATCAGA 380
Query 61 GGATTGCTT-TTCTTCATTGTCGGTGTTGTGGCTTTAGTTACTATTTTAGCACCATTGAC 119
|| ||| || ||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 381 GGGTTG-TTATTCTTCATTGTTGGTGTTGTGGCTCTAGTTACTATTTTAGCACCATTGAC 439
Query 120 ATCCAATTCGTATGATTCTTCGACGAGTTCGACACTTGTGCCCAACATTTATAGTAACTA 179
||| |||||||||||||||||| | ||||||||||||||||| |||||||||||||||||
Sbjct 440 ATCTAATTCGTATGATTCTTCGTCAAGTTCGACACTTGTGCCGAACATTTATAGTAACTA 499
Query 180 TAGGAGGATAAAGGAGCAAGCTGCTGTTGATTATCTTGATTTGAGGTCTCTTTCTTTAGG 239
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 500 TAGGAGGATAAAGGAGCAAGCTGCTGTTGATTATCTTGATCTGAGGTCTCTTTCTTTAGG 559
Query 240 GGCTAGTTTAAAAGAGTTTCCTTTGTGTGGTAAAGAAAGAGAAAGCTATGTGCCTTGTTA 299
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 560 GGCTAGTTTAAAAGAGTTTCCTTTTTGTGGTAAAGAAAGAGAAAGTTATGTGCCTTGTTA 619
Query 300 TAATATAACTGGGAATTTGCTTGCTGGGCTTCAAGAGGGTGAGGAGTTAGATCGACATTG 359
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 TAACATAACTGGGAATTTGCTTGCTGGGCTTCAAGAGGGTGAGGAGTTAGATCGACATTG 679
Query 360 TGAGTTTGAAAGAGAGAAGGAAAGATGTGTAGTTCGACCTCCGAGAGATTATAAAATACC 419
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 680 CGAGTTTGAAAGAGAGAAGGAAAGATGTGTAGTTCGTCCTCCGAGAGATTATAAAATACC 739
Query 420 ACTTAGGTGGCCACTTGGTAGAGATATCATATGGAGTGGTAACGTGAAGATTACCAAAGA 479
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 740 ACTTAGGTGGCCACTTGGTAGAGATATCATATGGAGTGGGAACGTGAAGATTACCAAAGA 799
Query 480 CCAGTTTCTTTCGTCAGGAACCGTGACAACGAGGTTAATGTTGCTTGAAGAGAATCAAAT 539
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 800 CCAGTTTCTTTCTTCAGGAACTGTGACAACGAGGTTAATGTTGCTTGAAGAGAATCAAAT 859
Query 540 TACTTTTCACTCGGAGGACGGCCTGGTCTTTGATGGGGTCAAAGACTATGCTCGTCAAAT 599
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 AACCTTTCACTCGGAGGACGGCCTGGTCTTTGATGGGGTCAAAGACTATGCTCGTCAAAT 919
Query 600 TGCTGAGATGATTGGTTTAGGAAGTGATACTGAGTTTGCGCAAGCGGGTGTACGGACTGT 659
|||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 920 TGCTGAGATGATAGGTTTAGGAAGTGATACTGAATTTGCTCAAGCGGGTGTACGGACTGT 979
Query 660 GTTAGACATTGGTTGCGGCTTTGGTAGCTTTGGTGCACATTTAGTGTCTTTGAAGCTGAT 719
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 980 GTTAGACATTGGTTGCGGATTTGGTAGCTTTGGTGCTCATTTAGTGTCTTTGAAGCTGAT 1039
Query 720 GCCTATATGTATCGCTGAGTATGAGGCAACTGGGAGCCAAGTCCAGTTAGCTCTAGAGAG 779
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1040 GCCTATATGTATTGCTGAGTATGAGGCAACTGGGAGCCAAGTTCAGTTAGCTCTAGAGAG 1099
Query 780 AGGCCTTCCTGCAATGATTGGCAATTTCTTTTCAAAACAGCTTCCTTACCCGGCATTGTC 839
|||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||
Sbjct 1100 AGGCCTTCCTGCAATGATTGGCAATTTCTTTTCAAAACAGCTTCCTTATCCAGCACTGTC 1159
Query 840 TTTTGATATGGTCCATTGTGCTCAATGTGGCACTACTTGGGATATCAAAGATGCAATGCT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 TTTTGATATGGTCCATTGTGCTCAATGTGGCACTACTTGGGATATCAAAGATGCAATGCT 1219
Query 900 ACTTTTGGAAGTGGATCGTGTTCTGAAACCCGGGGGATACTTTGTTTTAACTTCCCCCAC 959
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1220 ACTTTTGGAAGTGGATCGTGTTCTGAAACCCGGGGGATACTTTGTTTTAACTTCTCCCAC 1279
Query 960 AAACAAAGCACAAGGAAACTTACCAGATACCAAGAAAACGAGCATCTCAACACGGGTGGA 1019
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1280 AAACAAAGCACAGGGAAACTTACCAGATACCAAGAAAACGAGCATCTCAACACGGGTGAA 1339
Query 1020 TGAGTTATCTAAGAAAATCTGTTGGAGTCTAACAGCTCAGCAGGATGAGACGTTTCTTTG 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1340 TGAGTTATCTAAGAAAATCTGTTGGAGTCTAACAGCTCAGCAGGATGAGACGTTTCTTTG 1399
Query 1080 GCAGAAAACTG-TAGATTCAAGTTGCTATTCGTCTCGTTCGCAAGCTTCTATACCTCTTT 1138
|||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1400 GCAGAAAACTTCT-GATTCAAGTTGCTATTCTTCTCGTTCGCAAGCTTCTATACCTCTTT 1458
Query 1139 GCAAAGATGGAGATAGTGTTCCGTATTACCACCCACTGGTTCCATGTATAAGCGGAACCA 1198
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1459 GCAAAGATGGAGATAGCGTTCCGTATTACCACCCATTGGTTCCATGTATAAGCGGAACCA 1518
Query 1199 CAAGTAAACGCTGGATTCCTATACAGAACAGGTCTGCTGTTGCAGGAACAACCTCTGCTG 1258
| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1519 CGAGTAAACGCTGGATTTCTATACAGAACAGGTCTGCTGTTGCAGGAACAACCTCTGCCG 1578
Query 1259 GGCTTGAAATTCATGG 1274
||||||||||||||||
Sbjct 1579 GGCTTGAAATTCATGG 1594
Score = 883 bits (478), Expect = 0.0
Identities = 527/551 (96%), Gaps = 1/551 (0%)
Strand=Plus/Plus
Query 1311 ATGG-AGATCAGCTCTGAGAAACTATTGGTCCTTGCTTACACCTTTGATTTTCTCTGACC 1369
|||| | ||||||||||| ||||||||||||||||||||||||| | |||||||||||||
Sbjct 1591 ATGGAAAATCAGCTCTGAAAAACTATTGGTCCTTGCTTACACCTCTAATTTTCTCTGACC 1650
Query 1370 ACCCAAAGAGACCCGGTGATGAAGATCCTCTCCCGCCTTTTAACATGATACGCAATGTGA 1429
| || ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1651 ATCCGAAGAGACCCGGTGATGAGGATCCTCTCCCGCCTTTCAACATGATACGCAATGTGA 1710
Query 1430 TGGACATGAATGCTCGTTTTGGGAATTTAAATGCAGCCTTACTTGACGAAGGAAAGTCCG 1489
|||||||| ||||||||||||||||||||||||| || ||||| ||||||||||| || |
Sbjct 1711 TGGACATGCATGCTCGTTTTGGGAATTTAAATGCCGCTTTACTCGACGAAGGAAAATCTG 1770
Query 1490 CTTGGGTAATGAACGTTGTCCCAGTCAAGGCACGTAATACTCTTCCTATCATACTTGATC 1549
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1771 CTTGGGTAATGAACGTCGTCCCAGTCAATGCACGTAATACTCTTCCTATCATACTTGATC 1830
Query 1550 GTGGTTTCGCCGGTGTCCTACATGACTGGTGTGAACCATTCCCGACATATCCTCGAACAT 1609
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1831 GTGGTTTCGCCGGTGTTCTACATGACTGGTGTGAACCATTCCCGACATATCCTCGAACAT 1890
Query 1610 ATGACATGCTTCATGCCAATGAACTTCTCACACATCTTAGCTCAGAACGATGCAGCCTAA 1669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1891 ATGACATGCTTCATGCCAATGAACTTCTCACACATCTTAGCTCAGAACGATGCAGCCTAA 1950
Query 1670 TGGACTTATTCTTGGAGATGGACCGGATTCTTCGCCCTGAGGGATGGGTTGTTCTAAGCG 1729
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1951 TGGACTTGTTCTTGGAGATGGACCGGATTCTTCGCCCTGAGGGATGGGTTGTTCTAAGCG 2010
Query 1730 ACAAAGTGGGAGTAATCGAGATGGCTCGCGCACTTGCAGCTCGAGTACGTTGGGAATCAC 1789
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||
Sbjct 2011 ACAAAGTGGGAGTAATCGAGATGGCTCGAGCACTTGCAGCTCGAGTGCGTTGGGAAGCAA 2070
Query 1790 GAGTCATTGATCTTCAAGATGGTAGTGACCAAAGACTTCTCGTCTGTCAAAAACCATTCC 1849
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2071 GAGTCATTGATCTTCAAGATGGTAGTGACCAAAGACTTCTCGTCTGTCAAAAACCATTCA 2130
Query 1850 TCAAAAAATAA 1860
|||||||||||
Sbjct 2131 TCAAAAAATAA 2141
> AT1G13860.4 | Symbols: QUL1 | QUASIMODO2 LIKE 1 | chr1:4743309-4746911
REVERSE LENGTH=2629
Length=2629
Score = 1718 bits (930), Expect = 0.0
Identities = 1335/1529 (87%), Gaps = 34/1529 (2%)
Strand=Plus/Plus
Query 349 GATC-GACATTGTGAGTTTGAAAGAG-AGAAGGAAAGATGTGTAGTTCGACCTCCGAGAG 406
|||| || |||||||||||| ||||| || ||||||||||| ||||||| ||||| || |
Sbjct 818 GATCGGA-ATTGTGAGTTTGCAAGAGAAG-AGGAAAGATGTCTAGTTCGTCCTCCAAGGG 875
Query 407 ATTATAAAATACCACTTAGGTGGCCACTTGGTAGAGATATCATATGGAGTGGTAACGTGA 466
||||||| ||||||||||| ||||| ||||||||||||||||||||| ||| || ||||
Sbjct 876 ATTATAAGATACCACTTAGATGGCCTGTTGGTAGAGATATCATATGGACTGGGAATGTGA 935
Query 467 AGATTACCAAAGACCAGTTTCTTTCGTCAGGAACCGTGAC-AACGAGGTTAATGTTGCTT 525
||||||| ||||| ||||||||||| |||||||| |||| || ||| |||||||||||
Sbjct 936 AGATTACTAAAGATCAGTTTCTTTCATCAGGAACTATGACTAA-AAGGCTAATGTTGCTT 994
Query 526 GAAGAGAATCAAATTACTTTTCACTCGGAGGACGGCCTGGTCTTTGATGGGGTCAAAGAC 585
||||||||||||||||| ||||||||||| || ||| || ||||||||||||| |||||
Sbjct 995 GAAGAGAATCAAATTACGTTTCACTCGGATGATGGCTTGATCTTTGATGGGGTTAAAGAT 1054
Query 586 TATGCTCGTCAAATTGCTGAGATGATTGGTTTAGGAAGTGATACTGAGTTTGCGCAAGCG 645
|| ||| ||||||||||||||||||||| |||||||| |||||||||||| | |||||
Sbjct 1055 TACGCTTTTCAAATTGCTGAGATGATTGGATTAGGAAGCGATACTGAGTTTCCTCAAGCT 1114
Query 646 GGTGTACGGACTGTGTTAGACATTGGTTGCGGCTTTGGTAGCTTTGGTGCACATTTAGTG 705
||| ||||||||||||| ||||| |||||||| ||||||||||||||||||||| |||||
Sbjct 1115 GGTATACGGACTGTGTTGGACATCGGTTGCGGATTTGGTAGCTTTGGTGCACATCTAGTG 1174
Query 706 TCTTTGAAGC-TGATGCCTATATGTATCGCTGAGTATGAGGCAACTGGGAGCCAAGTCCA 764
|||||||| | |||||||||||||||| || ||||||||| ||| ||| |||||||||||
Sbjct 1175 TCTTTGAA-CGTGATGCCTATATGTATAGCAGAGTATGAGACAAGTGGAAGCCAAGTCCA 1233
Query 765 GTTAGCTCTAGAGAGAGGCCTTCCTGCAATGATTGGCAATTTCTTTTCAAAACAGCTTCC 824
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1234 ATTAGCTCTAGAGAGAGGCCTTCCTGCAATGATTGGAAATTTCTTTTCGAAACAGCTTCC 1293
Query 825 TTACCCGGCATTGTCTTTTGATATGGTCCATTGTGCTCAATGTGGCACTACTTGGGATAT 884
|| || || || || ||||| |||||||| |||||||||||||| | ||||||||||||
Sbjct 1294 ATATCCAGCTTTATCATTTGACATGGTCCACTGTGCTCAATGTGGGATTACTTGGGATAT 1353
Query 885 CAAAGATGCAATGCTACTTTTGGAAGTGGATCGTGTTCTGAAACCCGGGGGATACTTTGT 944
|||||||||||||||||||| ||||||||||||||||| || || ||||| || |||||
Sbjct 1354 AAAAGATGCAATGCTACTTTTAGAAGTGGATCGTGTTCTCAAGCCTGGGGGTTATTTTGT 1413
Query 945 TTTAACTTCCCCCACAAACAAAGCACAAGGAAACTT-ACCAGATACCAAGAAAACGAGCA 1003
||| || || || |||| ||||||||| ||||| || || ||||| |||||||| || |
Sbjct 1414 TTTGACCTCTCCTACAAGCAAAGCACAGGGAAA-TTCTCCTGATACTAAGAAAACAAGTA 1472
Query 1004 TCTCAACACGGGTGGATGAGTTATCTAAGAAAATCTGTTGGAGTCTAACAGCTCAGCAGG 1063
|||||||||| |||||||||||||||||||||||||| |||||||| ||| |||||| |
Sbjct 1473 TCTCAACACGAGTGGATGAGTTATCTAAGAAAATCTGCTGGAGTCTCTCAGGTCAGCAAG 1532
Query 1064 ATGAGACGTTTCTTTGGCAGAAAACTGTAGATTCAAGTTGCTATTCGTCTCGTTCGCAAG 1123
||||||||||||||||||||||||| | ||| ||| |||||| || ||||| |||||||
Sbjct 1533 ATGAGACGTTTCTTTGGCAGAAAACAGCAGACCCAAATTGCTACTCATCTCGCTCGCAAG 1592
Query 1124 CTTCTATACCTCTTTGCAAAGATGGA-GATAGTGTTCCGTATTACCACCCACTGGTTCCA 1182
||||||||||| ||||||||||| || ||||||||||| |||||||| || || ||||||
Sbjct 1593 CTTCTATACCTGTTTGCAAAGAT-GATGATAGTGTTCCATATTACCATCCTCTTGTTCCA 1651
Query 1183 TGTATAAGCGGAACCACA-AGTAAACGCTGGATTCCTATACAGAACAGGTCT-GCTG-TT 1239
|||||||| ||||||| | |||||||||||||||||||| ||||| |||||| | | ||
Sbjct 1652 TGTATAAGTGGAACCA-AGAGTAAACGCTGGATTCCTATTCAGAATAGGTCTAG-AGCTT 1709
Query 1240 GCAGGAACAACCTCTG-CTGGGCTTGAAATTCATGGT-TTAAAACCGGAAGAATTC-TTC 1296
||||||||| | || ||| |||||||||||||||| || ||||| ||||||||| |
Sbjct 1710 -CAGGAACAA-GTTTGTCTGAGCTTGAAATTCATGGTATT-AAACCTGAAGAATTCGAT- 1765
Query 1297 GAGGATACACAAGTATGGAGATCAGCTCTGAGAAACTATTGGTCCTTGCTTACACCTTTG 1356
||||||| |||||||||||||||||| || | ||||||||||||||||||||||||||||
Sbjct 1766 GAGGATATACAAGTATGGAGATCAGCCCTTAAAAACTATTGGTCCTTGCTTACACCTTTG 1825
Query 1357 ATTTTCTCTGACCACCCAAAGAGACCCGGTGATGAAGATCCTCTCCCGCCTTTTAACATG 1416
|||||||| ||||||||||| ||||| || |||||||||||| |||| |||||| |||||
Sbjct 1826 ATTTTCTCAGACCACCCAAAAAGACCTGGCGATGAAGATCCTGTCCCACCTTTTTACATG 1885
Query 1417 ATACGCAATG-TGATGGACATGAATGCTCGTTTTGGGAATTTAAATGCA-GCCTTACTTG 1474
|||||||||| | ||||||||||||||||||| ||||||| | ||| || |||||||||
Sbjct 1886 ATACGCAATGCT-ATGGACATGAATGCTCGTTATGGGAATCTGAAT-CAGGCCTTACTTA 1943
Query 1475 ACGAA-GGAAAGTCCGCTTGGGTAATGAACGTTGTCCCAGTCAAGGCACGTAATACTCTT 1533
|| || ||||| || | |||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 1944 ACCAAGGGAAA-TCAGTTTGGGTGATGAATGTTGTCCCAGTCAAAGCACGTAATACTCTT 2002
Query 1534 CCTATCATACTTGATCGTGGTTTCGCCGGTGTC-CTACATGACTGGTGTGAACCATTCCC 1592
||||| ||||||||||| ||||| |||| | | ||||||||||||||||||||||||||
Sbjct 2003 CCTATAATACTTGATCGAGGTTTTACCGGCG-CTCTACATGACTGGTGTGAACCATTCCC 2061
Query 1593 GACATATCCTCGAACATATGACATGCTTCATGCCAATGAACTTCTCACACATCTTAGCTC 1652
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2062 TACCTATCCTCGAACATATGACATGCTTCATGCCAATGAACTTCTCACACATCTTAGCTC 2121
Query 1653 AGAACGATGCAGCCTAATGGACTTATTCTTGGAGATGGACCGGATTCTTCGCCCTGAGGG 1712
|||||| ||||||||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct 2122 AGAACGGTGCAGCCTAATGGACTTGTTCTTGGAAATGGACCGGATTCTCCGCCCTGAGGG 2181
Query 1713 ATGGGTTGTTCTAAGCGACAAAG-TGGGAGTAATCGAGATGGCTCGCGCACTTGCAGCTC 1771
||||||||| ||||| || || | | ||||| || |||||||| || ||||||| ||||
Sbjct 2182 ATGGGTTGTGCTAAGTGATAA-GCTTGGAGTGATAGAGATGGCGCGTACACTTGCTGCTC 2240
Query 1772 GAGTACGTTGGGAATCACGAGTCATTGATCTTCAAGATGGTAGTGACCAAAGACTTCTCG 1831
| ||||| |||||| || ||||||| ||| ||||||| |||||||||||| | || || |
Sbjct 2241 GTGTACGCTGGGAAGCAAGAGTCATCGATATTCAAGACGGTAGTGACCAACGGCTCCTTG 2300
Query 1832 TCTGTCAAAAACCATTCCTCAAAAAATAA 1860
| |||||||||||||| | |||||||||
Sbjct 2301 TTTGTCAAAAACCATTATTAAAAAAATAA 2329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92067799530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5