BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896331
Length=1398
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03560.1 | Symbols: | F-box family protein with a domain of... 475 4e-133
AT5G38270.1 | Symbols: | F-box family protein | chr5:15289032-... 466 3e-130
AT2G03580.1 | Symbols: | F-box family protein-related | chr2:1... 267 3e-70
> AT2G03560.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr2:1079639-1081376 FORWARD
LENGTH=1362
Length=1362
Score = 475 bits (257), Expect = 4e-133
Identities = 673/862 (78%), Gaps = 76/862 (9%)
Strand=Plus/Plus
Query 51 TGATTGGTCCAAGCTTTGTCCTGACCTTTTGCGAAAGATTATCGAAAGCTTGAACTCTAT 110
|||||||||||||||||||||||| ||||| ||||||| ||||||||||||| |||| |
Sbjct 60 TGATTGGTCCAAGCTTTGTCCTGATATTTTGAGAAAGATCATCGAAAGCTTGAGCTCTCT 119
Query 111 TGACTACCACCGAGCAAAACTCGTTTGCTCAGATTGGTATTCGGTTTGGAAAACATGCGT 170
|| | ||||||||||| | ||||||||||||||||| || |||||||||||||||||
Sbjct 120 AGATTTTTACCGAGCAAAAATTGTTTGCTCAGATTGGTACTCCGTTTGGAAAACATGCGT 179
Query 171 GAAGCGGCCTCTGTATCCATGGCGGATC--ATAT--A-C----TATGATGA-T-G-A-TT 217
|||||||||||| ||||||||||||| |||| | | ||| || | | | | ||
Sbjct 180 AAAGCGGCCTCTGCGTCCATGGCGGATCATATATAGAGCAAAGTATTAT-ATTAGTACTT 238
Query 218 C-TTCGAGT-TTGTTCGATCCCAGA-GAAAACAAGTTTTACGAAACAAAACTCCTCGGAC 274
| || || | |||||||||||| || ||| ||||| |||| || || || |||||
Sbjct 239 CATT-GA-TGTTGTTCGATCCC-GACGAAGACAAGATTTA--TAA-GAATCTTGTCGGAG 292
Query 275 TTTCTGACAATAGCTATTATATGGCTAGCTCCGGAAACTGGCTCTTGATGGTACATTCTC 334
|||||||| | |||||| | |||||||||| ||||||||||||||||||| | ||||||
Sbjct 293 TTTCTGACGAGAGCTATCGTTTGGCTAGCTCTGGAAACTGGCTCTTGATGGCAGATTCTC 352
Query 335 GTCTCGATTTCTATATTTTTAACCTGTTAACGTGCGAAAA-GATCAATCTTCC-CTCAAT 392
|||| |||||||||||| |||||||||||||| || |||| |||||||||||| | ||||
Sbjct 353 GTCTTGATTTCTATATTGTTAACCTGTTAACGGGC-AAAAGGATCAATCTTCCAC-CAAT 410
Query 393 GGAGTCGT-CAATTCGCGGTGGAAAAGTAAGATTCGAGCCAAGCAGCGACTGTAGACAAG 451
|||||| | |||||| |||| | ||| ||||| | || ||||| | | | |||||
Sbjct 411 GGAGTC-TAAAATTCGTGGTGCACAAGCGAGATTTGTGCAAAGCAAATA-TTTTTACAAG 468
Query 452 GCAAGTGGGGACACTTG-GTCGATCATTTTTGTAAGACT-CCCG--T--GT-CGAAAGAC 504
| | || ||| ||| | || || |||||| || || | || ||||||
Sbjct 469 TC--G-AGGTACATTTGCTTTGA-CA--ATTGTAATTCTATTCGTATAAGTGAGAAAGA- 521
Query 505 A-TCTTGGGGTACAAAAGATCAGTTGTTCTTTGGATAAACGAGAGGGCAGGG-GATTATT 562
| | || | | ||||||| ||| |||||| |||||| |||||||| | ||| |||||||
Sbjct 522 AGTATTCGAATCCAAAAGAGCAGCTGTTCTGTGGATAGACGAGAGGAC-GGGAGATTATT 580
Query 563 TCGTTGCTTGGATTTTCAAGAACCAATATATGTTCACACACAAGAAAGGAGATGATTCTT 622
|||||||||||||||| || || || ||| |||||||||||||||||||||||||||| |
Sbjct 581 TCGTTGCTTGGATTTTTAATAAGCATTATTTGTTCACACACAAGAAAGGAGATGATTCGT 640
Query 623 GGTGGAACTGGAATAATAATTGGGA-TA--CGT--TTCTTTTGGATTTGGCTTATAAGCA 677
|||| ||||||| || ||| | || | | || ||| |||||||||||||||| |
Sbjct 641 GGTGT---TGGAATAGGAAGTGG-ACTAAACCTGGTTATTT-GGATTTGGCTTATAAGAA 695
Query 678 CAACAAGCTTTATCTGTATACTTACC-ACGATTCCATCAAGATTATTGATTTCTCTGGAG 736
||||||||||||| | |||| | ||| | | | |||||||||| |||||||||||||||
Sbjct 696 CAACAAGCTTTATATCTATAAT-ACCGATAACTACATCAAGATTTTTGATTTCTCTGGAG 754
Query 737 ATTCCCCTAAAGAAGAAATaaaaaaaaaaCCCGTATTGGGATCATCCGT-TTCACTACCA 795
||| |||||||||||| || |||| || ||||||| ||| ||| | |||| ||| |
Sbjct 755 ATTACCCTAAAGAAGATATCGAAAATAA-CCCGTATCATAATCGTCC-TCTTCAGTAC-A 811
Query 796 CATTTCGC--A--AGGGGAA-TA-TATTTG-GAAGAGGAGAATAGCCATTCAGAAATCAG 848
|| || | ||||||| | | |||| | | || |||||||| ||||||||||| |
Sbjct 812 --TT-CGGGGACCAGGGGAAGTCCT-TTTGAGCA-AG-AGAATAGCGATTCAGAAATCGG 865
Query 849 GAGAGGTTTTGGTCATCTTGAG 870
||||||||||| ||||||||||
Sbjct 866 GAGAGGTTTTGATCATCTTGAG 887
> AT5G38270.1 | Symbols: | F-box family protein | chr5:15289032-15290252
FORWARD LENGTH=1221
Length=1221
Score = 466 bits (252), Expect = 3e-130
Identities = 668/858 (78%), Gaps = 71/858 (8%)
Strand=Plus/Plus
Query 52 GATTGGTCCAAGCTTTGTCCTGACCTTTTGCGAAAGATTATCGAAAGCTTGAACTCTATT 111
||||||||||| |||||||| || | || || ||| |||||||||||| ||||| |
Sbjct 61 GATTGGTCCAAACTTTGTCCCGATATCTTACGGTCGATCCTCGAAAGCTTGAGCTCTACT 120
Query 112 GACTACCACCGAGC-AAAACTCGTTTGCTCAGATTGGTATTCGGTTTGGAAAACATGCGT 170
|| | |||||||| |||||| |||||||||||||||||||| |||||||||||||||
Sbjct 121 GATTTTCACCGAGCAAAAACT-GTTTGCTCAGATTGGTATTCAAATTGGAAAACATGCGT 179
Query 171 GAAGCGGCCTCTGTATCCATGGCGGATCATATACTATGATGATGATTC-TTCGAGT-TTG 228
||| |||||| | ||||||||||||||| ||| | | | ||||| || || | |||
Sbjct 180 GAA---GCCTCTTTGTCCATGGCGGATCATGTAC-GT-A-AAAGATTCATT-GA-TGTTG 231
Query 229 TTCGATCCCAGAGAAAACAAGTTTTACGAAA-CAA-AACTCCTCGGACTTTCTGACAATA 286
||| | ||| ||||| ||||| ||||| ||| || || | | ||||| || || | |
Sbjct 232 TTCAAACCCGGAGAAGACAAGATTTAC-AAAGGAACAA-ACGTTGGACTCTCCAACGACA 289
Query 287 GCTATTATATGGCTAGCTCCGGAAACTGGCTCTTGATGGTACATTCTCGTCTCGATTTCT 346
||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||
Sbjct 290 GCTATTATATGGCTAGCTCCGGAAACTGGCTCTTGATGGTAGATTCTCATCTCGGTTTCT 349
Query 347 ATATTTTTAACCTGTTAACGTGCGAAAAGA-TCAATCTTCCCTCAATGGAGTCGTCAATT 405
| |||||||||||||||||| || |||||| | ||||||| ||||||||||| ||||||
Sbjct 350 ACATTTTTAACCTGTTAACGAGC-AAAAGAATTGATCTTCCATCAATGGAGTCTTCAATT 408
Query 406 CGCGGTGGAAAAGTAAGATTCGAGCCAAGCAGCGACTGTAGACAAGG---CAAGTGGGGA 462
|||||||||||||| |||||||||| || | | || | || || || ||| ||||||
Sbjct 409 CGCGGTGGAAAAGTGAGATTCGAGCAAAAC--C-AC-G-AG-CATGGATTCAACTGGGGA 462
Query 463 CACTTGGTCGATCATTTTTGTAAGACTCCCGTGTCGAAAG-A-C-ATCTTG-GGGTACAA 518
||||| ||||| | || | ||||| | ||||||| ||| | | ||| ||| | ||
Sbjct 463 CACTTTGTCGAACCTTCTCGTAAGGTTACCGTGTCAAAAATAACCATCACACGGG-A-AA 520
Query 519 A-AGATCAGTTGTTCTTTGGATAAACGAGAGGGCAGGGGATTATT-TCGTTGCTTGGATT 576
||| | | ||||| |||||| ||||||| |||| |||| || | ||||||||||||
Sbjct 521 GTAGAGC--T-GTTCTGTGGATAGACGAGAGAACAGGAGATT-TTGTGGTTGCTTGGATT 576
Query 577 TTCAAGAACCAATA-TATGTTCACACACAAGAAAGGAGATGATTCTTGGTGGAACTGGAA 635
|| || | | || | ||||| || ||||||||||||||||||| ||||||||||||||
Sbjct 577 TTTAACTATCGTTACT-TGTTCTCATACAAGAAAGGAGATGATTCGTGGTGGAACTGGAA 635
Query 636 TAATAATTGGGATA-------C--G--TTTC--TTTT--GGATTTGGCTTATAAGCA-CA 679
||| ||||| ||| | | ||| |||| |||||||||||| | | | ||
Sbjct 636 TAACCATTGGAATATGGAAAGCTTGAATTTAAGTTTTTTGGATTTGGCTTACA-GAAACA 694
Query 680 ACAAGCTTTATCTGTATACTTACCACGATTC-CATCAA-GATTATTGATTTCTCTGGAGA 737
|||||||||| | || | |||| | || || |||||| | || |||||||||||||| |
Sbjct 695 GCAAGCTTTATATCTACA-TTACTAAGAGTCACATCAAAG-TTGTTGATTTCTCTGGAAA 752
Query 738 T--TCCCCTAAAGAAGAAATaaaaaaaaaaCCCGTATTGGGATCATCCGTTTC-ACTACC 794
| |||| || |||| ||| | ||||| |||||||||||| |||||||||| | |||
Sbjct 753 TGATCCCATA--GAAGTAATCGATAAAAA-CCCGTATTGGGAACATCCGTTTCGA-TACT 808
Query 795 -ACATTTCGCAAGGGGAATATATTTGGAAGAGGAGAATAGCCATTCAGAAATCAGGAGAG 853
| | |||||||||| ||| |||||||||||||| |||||||||||||||||
Sbjct 809 TA-ACCAAAAAAGGGGAATACATTAATAAGAGGAGAATAGCGATTCAGAAATCAGGAGAC 867
Query 854 GTTTTGGTCATCTTGAGT 871
|||||| | |||||||||
Sbjct 868 GTTTTGATTATCTTGAGT 885
Score = 104 bits (56), Expect = 2e-21
Identities = 106/128 (83%), Gaps = 12/128 (9%)
Strand=Plus/Plus
Query 882 AAGGGCACCGGTTCAAGATGTTGGTGATGGAATCAAGACTGGTTCAATCTGTTTCGTTAA 941
||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
Sbjct 1017 AAGAGCACCGGTTCAAGATGTTGGTGATGGAATCAAGAGTGGTTCAATATGTTTCGTCA- 1075
Query 942 AGATGACGTTTCGCCA---TATTATA-TG-TG-T--T-CAAATTGCGGTGTCTTCGATCT 992
| |||||| | |||| |||||| | || | | ||||||| ||||||||||||||
Sbjct 1076 -G-TGACGTATGGCCACCATATTATTCTCCTGCTGCTACAAATTGGGGTGTCTTCGATCT 1133
Query 993 TGCCACAA 1000
||| ||||
Sbjct 1134 TGCAACAA 1141
> AT2G03580.1 | Symbols: | F-box family protein-related | chr2:1093264-1094481
FORWARD LENGTH=435
Length=435
Score = 267 bits (144), Expect = 3e-70
Identities = 174/188 (93%), Gaps = 3/188 (2%)
Strand=Plus/Plus
Query 139 TCA-GATTGGTA-TTCGGTTTGGAAAACATGCGTGAAGCGGCCTCTGTATCCATGGCGGA 196
||| |||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 48 TCACGATTGGTATTTC-GTTTGGAAAACATGCGTGAAACGGCCTCTGTATCCATGGCGGA 106
Query 197 TCATATACTATGATGATGATTCTTCGAGTTTGTTCGATCCCAGAGAAAACAAGTTTTACG 256
|||||||||| |||||||||||||| |||||||| |||||| | ||| ||||| ||||||
Sbjct 107 TCATATACTACGATGATGATTCTTCCAGTTTGTTTGATCCCGGTGAAGACAAGATTTACG 166
Query 257 AAACAAAACTCCTCGGACTTTCTGACAATAGCTATTATATGGCTAGCTCCGGAAACTGGC 316
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 167 GGACAAAACTCCTCGGACTCTCTGACAATAGCTATTATATGGCTAGCTCCGGAAACTGGC 226
Query 317 TCTTGATG 324
||||||||
Sbjct 227 TCTTGATG 234
Score = 84.2 bits (45), Expect = 3e-15
Identities = 56/61 (92%), Gaps = 2/61 (3%)
Strand=Plus/Plus
Query 589 TATATGTTCACACACAAGAAAGGAGATGATTCTTGGTGGAACTGGAATAATAA-T-TGGG 646
||| |||||||| ||||||||||||||||||||||||||||||||||| |||| | ||||
Sbjct 348 TATTTGTTCACATACAAGAAAGGAGATGATTCTTGGTGGAACTGGAATGATAAGTATGGG 407
Query 647 A 647
|
Sbjct 408 A 408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68875147740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5