BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896332
Length=1173
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03590.1 | Symbols: ATUPS1, UPS1 | ureide permease 1 | chr2:... 1812 0.0
AT2G03600.4 | Symbols: UPS3 | ureide permease 3 | chr2:1097042-... 1085 0.0
> AT2G03590.1 | Symbols: ATUPS1, UPS1 | ureide permease 1 | chr2:1094757-1096968
FORWARD LENGTH=1802
Length=1802
Score = 1812 bits (981), Expect = 0.0
Identities = 1110/1174 (95%), Gaps = 2/1174 (0%)
Strand=Plus/Plus
Query 1 ATGTATATGATTGAGAGCAAGGGAGGGGCAATTGCCTGTATGCTCTTGGCTCTGCTCTTC 60
||||||||||| |||||||| ||||| |||||||| ||||||||||||||||| ||||||
Sbjct 373 ATGTATATGATAGAGAGCAAAGGAGGAGCAATTGCATGTATGCTCTTGGCTCTTCTCTTC 432
Query 61 TTAGGGACATGGCCAGCAATCATGACAT-TAACCGAAAGACGTGGTCGACTTCCTCAACA 119
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 433 TTAGGGACATGGCCAGCAATCATGAC-TCTAACCGAAAGACGCGGTCGACTTCCTCAACA 491
Query 120 CACTTATCTTGACTACACACTCACAAATCTGTTAGCTGCAGTGATCATTGCGTTGACACT 179
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 492 CACTTATCTTGACTACACACTCACAAATCTGTTAGCTGCAGTGATCATAGCGTTGACACT 551
Query 180 AGGCGAAATAGGTCCAAGCAGACCAAATTTCTTTACTCAGCTTTCTCAAGATAATTGGCA 239
||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 552 AGGAGAAATAGGTCCGAGCAGACCAAATTTCTTTACACAGCTCTCTCAAGATAATTGGCA 611
Query 240 GTCAGTTATGTTTGCAATGGCTGGAGGAATAGTTCTTAGCCTTGGAAACTTAGCAACACA 299
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 GTCAGTGATGTTTGCAATGGCTGGAGGAATAGTTCTTAGCCTTGGAAACTTAGCAACACA 671
Query 300 ATATGCTTGGGCTTATGTTGGTTTATCAGTTACTGAAGTCATCGCAGCTAGTATCACCGT 359
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 672 ATATGCTTGGGCTTATGTTGGTTTATCAGTTACTGAAGTCATCACAGCTAGTATCACTGT 731
Query 360 TGTTATCGGCACAACTTTGAACTATTTCTTGGATGATAGAATCAACAGAGCTGAGGTCCT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 TGTTATCGGCACAACTTTGAACTATTTCTTGGATGATAGAATCAACAGAGCTGAGGTCCT 791
Query 420 TTTCCCGGGCGTCGCTTGTTTCTTGATCGCTGTTTGCTTCGGCTCTGCTGTTCATAAATC 479
||||||||| |||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 792 TTTCCCGGGGGTCGCTTGTTTCTTGATCGCTGTTTGTTTCGGTTCCGCTGTTCATAAATC 851
Query 480 AAATGCAGCTGATAACAAATCCAAACTCCAAGATTTCAAAAGTTTAGAGACTGCGTCTTC 539
||||| |||||||||||| ||||||||||| |||||||||||||||||||| | |||||
Sbjct 852 CAATGCTGCTGATAACAAAACCAAACTCCAAAATTTCAAAAGTTTAGAGACTACTTCTTC 911
Query 540 CTTTGAAATGGAAACAGTTTCTGCAAATAACGGGTTAGCGAAAGGGAAAGCGAAAGAAGG 599
||| |||||||||||| ||||||||| ||||||||| | ||||||||||||||||||||
Sbjct 912 CTTCGAAATGGAAACAATTTCTGCAAGCAACGGGTTAACAAAAGGGAAAGCGAAAGAAGG 971
Query 600 GACTGCGGCGTTTCTCATAGAGCTTGAGAAACAAAGAGCTATAAAGGTCTTTGGGAAAAG 659
|||||| || |||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 972 GACTGCAGCTTTTCTCATAGAGCTTGAGAAGCAAAGAGCTATAAAGGTCTTTGGCAAAAG 1031
Query 660 CACAATAATCGGATTGGCGATAACTTTCTTTGCCGGTATTTGCTTTTCTCTGTTCTCACC 719
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1032 CACAATAATCGGATTGGTGATAACTTTCTTTGCCGGTATCTGCTTTTCTCTGTTCTCACC 1091
Query 720 TGCATTTAACTTAGCGACAAATGATCAATGGCACACTTTGGAACATGGAGTTCCAAAACT 779
|||||| |||||||| ||||| |||||||||||||| || |||||||||||||||||||
Sbjct 1092 TGCATTCAACTTAGCAACAAACGATCAATGGCACACATTAAAACATGGAGTTCCAAAACT 1151
Query 780 CAATGTGTACACCGCCTTCTTCTACTTCTCAATCTCTGCGTTTGTGGTTGCTCTGATACT 839
||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 1152 AAATGTGTACACTGCCTTCTTCTACTTCTCCATCTCTGCATTTGTAGTTGCTCTGATACT 1211
Query 840 TAACATTAGATTTCTCTATTGGCCTATACTTGGTCTCCCAAGATCTTCTTTCAAGGATTA 899
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1212 TAACATCAGATTTCTCTATTGGCCTATACTTGGTCTCCCAAGATCTTCTTTCAAGGCTTA 1271
Query 900 TCTAAATGACTGGAACGGTCGAGGATGGTCTTTCTTGGCTGGATTTTTATGTGGGTTTGG 959
| | |||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||
Sbjct 1272 TTTGAATGACTGGAACGGTCGAGGCTGGTCTTTCTTGGCTGGATTTCTATGTGGATTTGG 1331
Query 960 GAATGGTCTTCAGTTCATGGGCGGCCAAGCCGCAGGCTACGCAGCTGCAGACGCTGTTCA 1019
|||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 1332 CAATGGTCTTCAGTTCATGGGTGGTCAAGCCGCAGGCTATGCAGCTGCAGACGCTGTTCA 1391
Query 1020 GGCACTTCCACTTGTGAGTACATTTTGGGGGATATTGTTGTTTGGAGAATACAGGAGATC 1079
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1392 GGCACTTCCACTTGTGAGTACATTTTGGGGGATATTGTTGTTTGGAGAATATAGAAGATC 1451
Query 1080 ATCAAGAAAAACATATACACTTCTCATTAGTATGCTTCTTATGTTCATAGTCGCTGTCGC 1139
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1452 ATCAAGAAAAACATATACACTTCTCATCAGTATGCTTCTTATGTTCATAGTCGCTGTCGC 1511
Query 1140 GGTTCTTATGGCCTCCTCGGGACATAGAAAATGA 1173
|||||||||||| |||||||||||||||||||||
Sbjct 1512 GGTTCTTATGGCTTCCTCGGGACATAGAAAATGA 1545
> AT2G03600.4 | Symbols: UPS3 | ureide permease 3 | chr2:1097042-1098826
FORWARD LENGTH=1269
Length=1269
Score = 1085 bits (587), Expect = 0.0
Identities = 906/1050 (86%), Gaps = 61/1050 (6%)
Strand=Plus/Plus
Query 1 ATGTATATGATTGAGAGCAAGGGAGGGGCAATTGCCTGTATGCTCTTGGCTCTGCTCTTC 60
|||||| |||| |||||||| ||||| |||| | ||||||||||||||||||||||||
Sbjct 54 ATGTATGTGATAGAGAGCAAAGGAGGAACAATCACTTGTATGCTCTTGGCTCTGCTCTTC 113
Query 61 TTAGGGACATGGCCAGCAATCATGACAT-TAACCGAAAGACGTGGTCGACTTCCTCAACA 119
|||||||||||||||||||||||||| | ||||||||||||| ||| |||||||||||||
Sbjct 114 TTAGGGACATGGCCAGCAATCATGAC-TCTAACCGAAAGACGCGGTAGACTTCCTCAACA 172
Query 120 CACTTATCTTGACTACACACTCACAAATCTGTTAGCTGCAGTGATCATTGCGTTGACACT 179
|||||||||||||||||||| ||||| |||||||||||||| ||||| ||||| |||||
Sbjct 173 TACTTATCTTGACTACACACTGACAAACCTGTTAGCTGCAGTTATCATAGCGTTTACACT 232
Query 180 AGGCGAAATAGGTCCAAGCAGACCAAATTTCTTTACTCAGCTTTCTCAAGATAATTGGCA 239
|||||||||| |||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 233 AGGCGAAATAAGTCCAAGCAGACCAAATTTCACCACACAGCTTTCTCAAGATAATTGGCC 292
Query 240 GTCAGTTATGTTTGCAATGGCTGGAGGAATAGTTCTTAGCCTTGGAAACTTAGCAACACA 299
||| || |||||||||||||||||||||||| ||||||||||||| | ||||||||||||
Sbjct 293 GTCTGTGATGTTTGCAATGGCTGGAGGAATATTTCTTAGCCTTGGGACCTTAGCAACACA 352
Query 300 ATATGCTTGGGCTTATGTTGGTTTATCAGTTACTGAAGTCATCGCAGCTAGTATCACCGT 359
|||||||||||||| |||||| ||||| || |||||||||||| ||||||||||| ||||
Sbjct 353 ATATGCTTGGGCTTTTGTTGGGTTATCTGTCACTGAAGTCATCACAGCTAGTATCGCCGT 412
Query 360 TGTTATCGGCACAACTTTGAACTATTTCTTGGATGATAGAATCAACAGAGCTGAGGTCCT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 TGTTATCGGCACAACTTTGAACTATTTCTTGGATGATAGAATCAACAGAGCTGAGGTCCT 472
Query 420 TTTCCCGGGCGTCGCTTGTTTCTTGATCGCTGTTTGCTTCGGCTCTGCTGTTCATAAATC 479
||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 473 TTTCCCGGGGGTCGCTTGTTTCTTGATCGCTGTTTGTTTCGGTTCTGCTGTTCATAAATC 532
Query 480 AAATGCAGCTGATAACAAATCCAAACTCCAAG-ATTTCAAAAGTTTAGAGACTGCGTCTT 538
|||||||||||||||||||||||||||||||| ||| |||||||||||||||| | ||||
Sbjct 533 AAATGCAGCTGATAACAAATCCAAACTCCAAGGATT-CAAAAGTTTAGAGACTACTTCTT 591
Query 539 CCTTTGAAATGGAAACA-GTTTCTGCAAATAACGGGTTAGCGAAAGGGAAAGCGAAAGAA 597
|||| ||||||||||| ||| || | | || || || || ||||| |||| |
Sbjct 592 CCTTCCAAATGGAAACAAGTT-CT--ATA-AA------AG--AA-GGAAAAGCAAAAGTA 638
Query 598 GGGACTGCGGCGTTTCTCATAGAGCTTGAGAAACAAAGAGCTATAAAGGTCTTTGGGAAA 657
|||||||| | ||||| || ||| |||||||||||||||| |||||| | |
Sbjct 639 GGGACTGCAGATTTTCTTATTGAGGTTGAGAAACAAAGAGCCATAAAG--C------A-- 688
Query 658 AGCACAATAATCGGATTGGCGATAACTTTCTTTGCCGGTATTTGCTTT-TCTCTGTTCTC 716
|| | |||| ||| |||||||||| |||||||||||||| || ||| ||||| ||||
Sbjct 689 --CA-A-TAATTGGACTGGCGATAACATTCTTTGCCGGTATCTG-TTTCTCTCTAATCTC 743
Query 717 ACCTGCATTTAA-CTTAGCGACAAATGATCAATGGCACACTTTGGAACATGGAGTT--C- 772
||||||| | || |||||||||||| |||||||||||||||||| ||||||||||| |
Sbjct 744 ACCTGCAGT-AAGCTTAGCGACAAACGATCAATGGCACACTTTGAAACATGGAGTTGGCA 802
Query 773 CA-----AAAC-T------C-AA---T----GTGTACACCGCCTTCTTCTACTTCTCAAT 812
|| |||| | | || | |||||||| ||||||||||||||||| ||
Sbjct 803 CACTTTGAAACATGGAGTTCCAAAACTCAATGTGTACACAGCCTTCTTCTACTTCTCCAT 862
Query 813 CTCTGCGTTTGTGGTTGCTCTGATACTTAACATTAGATTTCTCTATTGGCCTATACTTGG 872
|||| | |||| ||||| ||||||||| ||||| | ||||||||||||||||||||||||
Sbjct 863 CTCTTCATTTGGGGTTGGTCTGATACTAAACATCATATTTCTCTATTGGCCTATACTTGG 922
Query 873 TCTCCCAAGATCTTCTTTCAAGGATTATCTAAATGACTGGAACGGTCGAGGATGGTCTTT 932
|||||||||||| |||||||||| ||| ||||||||||||||||||||||| ||||||||
Sbjct 923 TCTCCCAAGATCATCTTTCAAGGCTTACCTAAATGACTGGAACGGTCGAGGCTGGTCTTT 982
Query 933 CTTGGCTGGATTTTTATGTGGGTTTGGGAATGGTCTTCAGTTCATGGGCGGCCAAGCCGC 992
||||||||||||| | ||||| ||||| |||||||||||||| |||||||| ||||||||
Sbjct 983 CTTGGCTGGATTTCTCTGTGGATTTGGTAATGGTCTTCAGTTTATGGGCGGTCAAGCCGC 1042
Query 993 AGGCTACGCAGCTGCAG-ACGCTGTTCAGG 1021
|| || || ||||||| | ||||||||||
Sbjct 1043 TGGTTATGCTGCTGCAGGA-GCTGTTCAGG 1071
Score = 172 bits (93), Expect = 5e-42
Identities = 123/137 (90%), Gaps = 4/137 (3%)
Strand=Plus/Plus
Query 1039 ACATTTTGGGGGATATTGTTGTTTGGAGAATACAGGAGATCATCAAGAAAAACATATACA 1098
||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1116 ACATTTTGGGGGATACTGCTGTTTGGAGAATACAAAAGATCATCAAGAAAAACATATACA 1175
Query 1099 CTTCTCATTAGTATGCT-TCTTATGTTCATAG-TCGCTGTCGCGGTTCTTATGGCCTCCT 1156
||||| || |||||||| | |||||||||||| | || ||||||||||| |||||||| |
Sbjct 1176 CTTCTTATCAGTATGCTAT-TTATGTTCATAGCT-GCAGTCGCGGTTCTGATGGCCTCAT 1233
Query 1157 CGGGACATAGAAAATGA 1173
|||||||| ||||||||
Sbjct 1234 CGGGACATCGAAAATGA 1250
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57580025115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5