BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896340
Length=681
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03690.1 | Symbols: | coenzyme Q biosynthesis Coq4 family p... 1048 0.0
> AT2G03690.1 | Symbols: | coenzyme Q biosynthesis Coq4 family
protein / ubiquinone biosynthesis Coq4 family protein | chr2:1121900-1123171
REVERSE LENGTH=1063
Length=1063
Score = 1048 bits (567), Expect = 0.0
Identities = 643/681 (94%), Gaps = 0/681 (0%)
Strand=Plus/Plus
Query 1 ATGATCATCGAAAGAGCTCGAGTTCCGTTGAGGCGATGGCAACAAGCTGCGGTGGCAATG 60
||||| || ||||||||||||||||||||||| |||||||||||||| || ||||| |||
Sbjct 161 ATGATTATTGAAAGAGCTCGAGTTCCGTTGAGCCGATGGCAACAAGCGGCCGTGGCGATG 220
Query 61 GGATCTGCTATCGGTGCGTTGGTAGATCCTCGTAGAGCGGATCTGATCGCAGCTCTCGGT 120
||||||||| ||||||||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 221 GGATCTGCTCTCGGTGCGTTGGTTGATCCTCGTAGAGCGGATCTAATCGCTGCTCTCGGC 280
Query 121 GAAACGACTGGTAAACCAGCTTTTGAAATGGTTCTTGAGAGGATGAAGAAGAGCGATGAA 180
||||| || |||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 281 GAAACTACCGGTAAACCAGCTTTTGAAATGGTTCTTGAGAGAATGAAGAAGAGCGAAGAA 340
Query 181 GGAAGAGCTATATTATTGGAACGTCCTCGTGTAGTGTCAGAGCAAGTAGGTCATGCTTGG 240
|||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 341 GGAAGAGCTATATTATTGGAGCGTCCTCGAGTTGTGTCAGAGCAAGTAGGTCATGCTTGG 400
Query 241 GATCTACCAGACAACACATTTGGAGCTGCATATGCTAAATTCATGGGATCTAGAAACTTC 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 GATCTACCAGAAAACACATTTGGAGCTGCATATGCTAAATTCATGGGATCTAGAAACTTC 460
Query 301 TCTCCCGATGATCGTCCGCCCGTGAGATTCATGGAGACGGATGAATTGGCTTATGTTGCA 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 461 TCTCCCGATGATCGTCCGCCCGTAAGATTCATGGAGACGGATGAATTGGCTTACGTAGCG 520
Query 361 ACACGGGCGCGTGAAGTTCATGACTTATGGCACACTCTGTTTGGCCTTCCTACGAATCTT 420
|||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 521 ACACGGGCACGCGAAGTTCACGACTTATGGCACACTCTGTTTGGCCTTCCTACGAATCTT 580
Query 421 ATTGGCGAGTCGGCTTTGAAAGTTATAGAGTTTGAGCAGATGTATCTTCCGATGTGTATG 480
|| ||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 581 ATCGGCGAGTCGTCTTTGAAAGTTATCGAGTTTGAGCAAATGTATCTTCCGATGTGTATG 640
Query 481 CTTTCTGTGATTGGAGGCACTGTGAGGTTCAACGAGAAGCAGAGATCAATGTTCTTGAAG 540
|| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 641 CTCTCTGTGATTGGAGGTACTGTGAGGTTCAACGAGAAGCAAAGATCAATGTTCTTGAAG 700
Query 541 CATTACCTTCCTTGGGCTGTTCGAGCAGGAAGACAATGCACTGACCTCATGTGTGTGTAC 600
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 701 CATTACCTTCCTTGGGCTGTTCGTGCTGGAAGACAATGCACTGACCTCATGTGTGTGTAC 760
Query 601 TATGAGCGTCACTTTAGTGAAGACTTAGAGCAAGTTCGAAGAAAATGGGGAATCATCCCA 660
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 761 TATGAGCGTCACTTTAGTGAAGACTTGGAGCAAGTTCGTAGAAAATGGGGAATCATCCCT 820
Query 661 GCTCCTCAACATCCTAAATGA 681
|||||||||||||||||||||
Sbjct 821 GCTCCTCAACATCCTAAATGA 841
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32953600432
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5