BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896343
Length=807
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03710.1 | Symbols: SEP4, AGL3 | K-box region and MADS-box t... 1170 0.0
AT5G60910.1 | Symbols: AGL8, FUL | AGAMOUS-like 8 | chr5:245024... 152 5e-36
AT1G24260.2 | Symbols: SEP3, AGL9 | K-box region and MADS-box t... 148 6e-35
AT1G69120.1 | Symbols: AP1, AGL7 | K-box region and MADS-box tr... 93.5 3e-18
AT1G26310.1 | Symbols: CAL, CAL1, AGL10 | K-box region and MADS... 89.8 4e-17
> AT2G03710.1 | Symbols: SEP4, AGL3 | K-box region and MADS-box
transcription factor family protein | chr2:1129268-1131838
FORWARD LENGTH=1341
Length=1341
Score = 1170 bits (633), Expect = 0.0
Identities = 754/807 (93%), Gaps = 30/807 (4%)
Strand=Plus/Plus
Query 1 ATGGGAAGAGGAAAAGTGGAGCTGAAGAGGATAGAGAACAAGATCAATAGACAAGTTACT 60
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 ATGGGAAGAGGGAAAGTTGAGCTGAAGAGGATAGAGAACAAGATCAATAGACAAGTTACT 414
Query 61 TTTGCAAAGAGAAGGAATGGTTTGCTCAAGAAGGCTTATGAGCTTTCTGTCCTTTGTGAT 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 TTTGCAAAGAGAAGAAATGGTTTGCTCAAGAAGGCTTATGAGCTTTCTGTCCTTTGTGAT 474
Query 121 GCTGAGATTGCTCTTCTCATTTTCTCTAACCGTGGCAAGCTCTACGAATTCTGCAGCAGC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 GCTGAGATTGCTCTTCTCATTTTCTCTAACCGTGGCAAGCTCTACGAATTCTGCAGCAGC 534
Query 181 CCTAGTGGTATGGCGAAGACAGTTGACAAGTATAGAAAATATAGCTATGCAACAATGGAT 240
|||||||||||||||| ||| ||||| |||||||||||| |||| |||||||||||||||
Sbjct 535 CCTAGTGGTATGGCGAGGACGGTTGATAAGTATAGAAAACATAGTTATGCAACAATGGAT 594
Query 241 CCAAATCAATCAGCTAAAGACTTGCAGGATAAGTACCAAGACTACTTGAAGCTTAAATCA 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 595 CCAAATCAATCAGCTAAAGACTTGCAGGATAAGTATCAAGACTACTTGAAGCTTAAATCA 654
Query 301 AGAGTTGAGATCCTTCAACATTCACAAAGGCATTTGCTAGGTGAAGAGCTAGCCGAGATG 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 655 AGAGTTGAGATCCTTCAACATTCACAAAGGCATTTGCTAGGTGAAGAGCTATCCGAGATG 714
Query 361 GATGTGAATGAGCTTGAGCAACTAGAACGCCAAGTAGATGCATCACTAAGACAAATAAGA 420
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 715 GATGTGAATGAGCTTGAGCATCTCGAACGCCAAGTAGATGCATCACTAAGACAAATAAGA 774
Query 421 TCAACCAAGGCTCGGACTATGCTTGATCAACTATCTGACCTCAAAACTAAGGAGGAAATG 480
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 TCTACCAAGGCTCGGTCTATGCTTGATCAACTATCTGACCTCAAAACTAAGGAGGAAATG 834
Query 481 TTATTGGAAACCAACAGAGATCTTAGGAGAAAGTTGGATGAAAGTGATGCAGCACTTACT 540
|||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 835 TTATTGGAAACCAATAGAGATCTTAGGAGAAAGTTGGAGGACAGTGATGCAGCACTTACT 894
Query 541 CAATCGTTTTGGGGAGGTTCTGCTGCAGAACATTCCcaacagcaacatcaacaacaacaa 600
||||||||||||||| |||||||||||||||| | |||| ||||||||||||||
Sbjct 895 CAATCGTTTTGGGGAAGTTCTGCTGCAGAACAA-C--AACAACAACATCAACAACA---- 947
Query 601 cagcaacatcaacaacaacaaGGCATGAGCTCTTATCAATCAAACCCTCCAATTCAGGAA 660
|||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 948 --GCAACA--A----------GGCATGAGCTCTTATCAATCAAACCCTCCAATTCAGGAA 993
Query 661 GCAGGTTTCTTCAAGCCTCTACAAGGCAATGTAGCATTGCAAATAAGCAGTCATTACAAT 720
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 994 GCAGGTTTCTTCAAGCCTCTACAAGGCAATGTAGCATTGCAAATGAGCAGTCATTACAAT 1053
Query 721 CACAGTCCTGCTGCTGTGACAAATGCAAGCAACTCTGCAACAACATCACAGAATGTTAAT 780
|||| |||||| | || ||||| |||||||||||||||||||||||||||||||
Sbjct 1054 CACAATCCTGC-------A-AA-TGCAACCAACTCTGCAACAACATCACAGAATGTTAAT 1104
Query 781 GGATTCTTCCCTGGATGGATGGTCTGA 807
|||||||||||||||||||||||||||
Sbjct 1105 GGATTCTTCCCTGGATGGATGGTCTGA 1131
> AT5G60910.1 | Symbols: AGL8, FUL | AGAMOUS-like 8 | chr5:24502482-24506143
REVERSE LENGTH=1113
Length=1113
Score = 152 bits (82), Expect = 5e-36
Identities = 143/172 (83%), Gaps = 6/172 (3%)
Strand=Plus/Plus
Query 1 ATGGGAAGAGGAAAAGTGGAGCTGAAGAGGATAGAGAACAAGATCAATAGACAAGTTACT 60
||||||||||| | || ||||||||||||||||||||||||||||||| |||||||||
Sbjct 131 ATGGGAAGAGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATCAATAGGCAAGTTACT 190
Query 61 TT-TGCAAAGAGAAGGAATGGTTTGCTCAAGAAGGCTTATGAGCTTTCTGTCCTTTGTGA 119
|| | ||||||||||| ||||||||||||||| ||| ||||| | ||||| || || ||
Sbjct 191 TTCT-CAAAGAGAAGGTCTGGTTTGCTCAAGAAAGCTCATGAGATCTCTGTTCTCTGCGA 249
Query 120 TGCTGAGATTGCTCTTC-TCATTTTCTCTAACCGT-GGCAAGCTCTACGAAT 169
||||||| ||||||| | || | |||||| || ||||| |||| |||||
Sbjct 250 TGCTGAGGTTGCTCT-CATCGTCTTCTCTT-CCAAAGGCAAACTCTTCGAAT 299
> AT1G24260.2 | Symbols: SEP3, AGL9 | K-box region and MADS-box
transcription factor family protein | chr1:8593642-8596098
REVERSE LENGTH=1140
Length=1140
Score = 148 bits (80), Expect = 6e-35
Identities = 147/179 (82%), Gaps = 6/179 (3%)
Strand=Plus/Plus
Query 1 ATGGGAAGAGGAAAAGTGGAGCTGAAGAGGATAGAGAACAAGATCAATAGACAAGTTACT 60
||||||||||| | ||| || |||||||||||||||||||||||||||| ||||| ||
Sbjct 237 ATGGGAAGAGGGAGAGTAGAATTGAAGAGGATAGAGAACAAGATCAATAGGCAAGTGACG 296
Query 61 TTTGCAAAGAGAAGGAATGGT-TTGCTCAAGAAGGCTTATGAGCTTTCTGTCCTTTGTGA 119
||||||||||||||||||||| || | ||||| || || |||||||| || || |||||
Sbjct 297 TTTGCAAAGAGAAGGAATGGTCTTT-TGAAGAAAGCATACGAGCTTTCAGTTCTATGTGA 355
Query 120 TGCTGA-GATTGCTCTTC-TCATTTTCTCTAACCGTGGCAAGCTCTACGAATTCTGCAG 176
||| || | ||||||| | |||| ||||| || | || ||||| ||||| || |||||
Sbjct 356 TGCAGAAG-TTGCTCT-CATCATCTTCTCAAATAGAGGAAAGCTGTACGAGTTTTGCAG 412
> AT1G69120.1 | Symbols: AP1, AGL7 | K-box region and MADS-box
transcription factor family protein | chr1:25982330-25986313
REVERSE LENGTH=1228
Length=1228
Score = 93.5 bits (50), Expect = 3e-18
Identities = 97/118 (82%), Gaps = 10/118 (8%)
Strand=Plus/Plus
Query 23 TGAAGAGGATAGAGAACAAGATCAATAGACAAGTTACTTT-T-GCAAAGAGAAG-GAATG 79
|||||||||||||||||||||||||||||||||| || || | | ||| ||||| | ||
Sbjct 234 TGAAGAGGATAGAGAACAAGATCAATAGACAAGTGACATTCTCG-AAA-AGAAGAGC-TG 290
Query 80 GT-TTGCTCAAGAAGGCTTATGAGCTTTCTGTCCTTTGTGATGCTGA-GATTGCTCTT 135
|| || | ||||| ||| ||||| | ||||| || ||||||||||| | ||||||||
Sbjct 291 GTCTTT-TGAAGAAAGCTCATGAGATCTCTGTTCTCTGTGATGCTGAAG-TTGCTCTT 346
> AT1G26310.1 | Symbols: CAL, CAL1, AGL10 | K-box region and MADS-box
transcription factor family protein | chr1:9100153-9103603
REVERSE LENGTH=1038
Length=1038
Score = 89.8 bits (48), Expect = 4e-17
Identities = 104/130 (80%), Gaps = 8/130 (6%)
Strand=Plus/Plus
Query 1 ATGGGAAGAGGAAAAGTGGAGCTGAAGAGGATAGAGAACAAGATCAATAGACAAGTTACT 60
|||||||| || | || || |||||||||||||||||||||||||||||||||| ||
Sbjct 94 ATGGGAAGGGGTAGGGTTGAATTGAAGAGGATAGAGAACAAGATCAATAGACAAGTGACA 153
Query 61 TT-T-GCAAAGAGAAGGAA-TGGT-TTGCTCAAGAAGGCTTATGAGCTTTCTGTCCTTTG 116
|| | | ||| ||||| || |||| || | ||||| ||| | ||| | ||||| |||||
Sbjct 154 TTCTCG-AAA-AGAAG-AACTGGTCTTT-TGAAGAAAGCTCAGGAGATCTCTGTTCTTTG 209
Query 117 TGATGCTGAG 126
|||||| |||
Sbjct 210 TGATGCCGAG 219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39283102954
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5