BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896356
Length=840
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03840.1 | Symbols: TET13 | tetraspanin13 | chr2:1173170-117... 1354 0.0
> AT2G03840.1 | Symbols: TET13 | tetraspanin13 | chr2:1173170-1174115
FORWARD LENGTH=837
Length=837
Score = 1354 bits (733), Expect = 0.0
Identities = 806/841 (96%), Gaps = 5/841 (1%)
Strand=Plus/Plus
Query 1 ATGGCGAGAGATAAAGAAGAACAAAACAATGAGAACCCTTCGTCATTTATCAAGAATATT 60
|||||||||||||||||||| |||||||||||||| || | ||| || || |||| ||
Sbjct 1 ATGGCGAGAGATAAAGAAGATCAAAACAATGAGAATCC-T--TCAATTGTCCAGAACATG 57
Query 61 TCATTTCCATTCAACACCATTTTCTTGATCTCAACCGCAATCTTCCTCGTCACAGCCGCT 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 58 TCATTTCCATTCAACACCATTTTCTTGATCTCAAGCGCAATCTTCCTCGTCACAGCCGCT 117
Query 121 TTCTGGTTCGTAACCGTCATAACATTACATTACAGGACCGATGAATGTAACCGGTTCGTC 180
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 118 TTCTGGTTCGTAGCCGTCATGACATTACATTACAGGACCGATGAATGTAACCGGTTCGTC 177
Query 181 ACAACTCCCGGAATCTTCATAAGCTTCTCATTGCTCGCTATGTCCCTCACTGGATTCTAC 240
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 178 ACAACTCCCGGAATATTCATAAGCTTCTCATTGCTTGCTATGTCCCTCACTGGATTCTAC 237
Query 241 GCAGCTTACCTCAAATCCGATTGTCTCTTCCGAATCCACTTCTTTATCTTCTTCTTGTGG 300
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 238 GCAGCTTACTTCAAATCCGATTGTCTCTTTCGAATCCACTTCTTTATCTTCTTCTTGTGG 297
Query 301 ATGTTCGTTGTCGTGTCTAAAGCCATCTTTGTCATCTTTCTACAAAAGGAGACCAATCCT 360
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 298 ATGTTCGTTGTCGTGTCTAAAGCAATCTTTGTCATCTTTCTACATAAGGAGACCAATCCT 357
Query 361 AGGTTGTTTCCTGGGACCAAGATTCAGGAGTTTAGGTACGAGGATTACTCAGGATGGGTT 420
|| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 358 AGATTGTTTCCTGGGACCAAGATTTATGAGTTTAGGTACGAGGATTACTCAGGATGGGTT 417
Query 421 AGTAGATTGGTCATCAAAGACGATGAATGGTATCGTACAAGGAGATGTCTTTTTAAGGAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 418 AGTAGATTGGTCATCAAAGACGATGAATGGTATCGTACAAGGAGATGTCTTGTTAAGGAC 477
Query 481 AATATTTGTAACAGGTTAAACCATAAGATGCCAGCTTCTGAGTTTTATCAGATGAATCTA 540
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AATGTTTGTAACAGGCTAAACCATAAGATGCCAGCTTCTGAGTTTTATCAGATGAATCTA 537
Query 541 ACTCCTATACAGTCGGGTTGCTGCAAACCACCACTTTCATGTGGATTGAATTACGAGAAA 600
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 538 ACTCCTATACAGTCGGGTTGTTGCAAACCACCACTTTCATGTGGATTGAATTACGAGAAA 597
Query 601 CCAAAT-ATGTGGACAGTTTCAAGATATTATAACAATTTAGAAGTTGATTGCAAGAGATG 659
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CCAAATAAT-TGGACAGTTTCAAGATATTATAACAATTTAGAAGTTGATTGCAAGAGATG 656
Query 660 GAACAATTCTGCAGATACATTATGCTTCGATTGTGATGCGTGTAAAGCTGTGATTATTGC 719
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 657 GAACAATTCTGCAGATACATTATGCTTCGATTGTGATTCATGTAAAGCTGTGATTATTGC 716
Query 720 TGATTTACATAATAATTCATTTTCCATAACAATTAACATTATTCATATCATCTTTAGTCT 779
|||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 717 TGATGTACATAATACTTCATTTTCCATAACAGTTAACATTATTCATATCATCTTTAGTCT 776
Query 780 TTCCATCGGCATGACCGGTTGGTTTGCCTGGTTAAGGATCCTTCGAGAAAGTCAGAAATA 839
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TTGTATCGGCATGACCGGTTGGTTTGCCTGGTTAAGGATCCTTCGAGAAAGTCAGAAATA 836
Query 840 G 840
|
Sbjct 837 G 837
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40940829805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5