BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg896372

Length=336
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G04025.1 | Symbols: RGF3 | Encodes a root meristem growth fa...   457    4e-128


> AT2G04025.1 | Symbols: RGF3 | Encodes a root meristem growth 
factor (RGF).  Belongs to a family of functionally redundant 
homologous peptides that are secreted, tyrosine-sulfated, and 
expressed mainly in the stem cell area and the innermost 
layer of central columella cells. RGFs are required for maintenance 
of the root stem cell niche and transit amplifying cell 
proliferation.  Members of this family include: At5g60810 
(RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), 
At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 
(RGF8) and At5g64770 (RGF9). | chr2:1276777-1277734 
REVERSE LENGTH=511
Length=511

 Score =  457 bits (247),  Expect = 4e-128
 Identities = 310/339 (91%), Gaps = 9/339 (3%)
 Strand=Plus/Plus

Query  1    ATGACTACTTTGTCAAAGATTCTATGTGTGTTGATCGTTCTTCTTTTATGTTTCTCCTTT  60
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  57   ATGACTACTTTGTCAAAGATTCTATGTGTGTTGATCATTCTTCTTTTATGTTTCTCCTTT  116

Query  61   CGATATTCACTTCATGAAGATGGGAATCAACAGTCAAGCCATGACTTCGTTTCAACTGCC  120
            || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| 
Sbjct  117  CGCTATTCACTTCATGAAGATGGGAATCAACAGTCAAGCCGTGACTTCGTTTCAACTGCT  176

Query  121  AAGGCGACGACTGAATATGGTGATGtgat-aaagaagatgataggaggaagaaaattgat  179
            || | | ||| | |||||||||||||||| ||| ||||||||| ||||| ||||| ||||
Sbjct  177  AA-G-G-CGATTAAATATGGTGATGTGATGAAA-AAGATGATACGAGGACGAAAACTGAT  232

Query  180  gatagcaaatgg-aaaagaagaagaagaagaaacgaca-atgaagagaggcaatagagag  237
            ||| |||| |||  ||| |||||||||  ||||||| | ||||||||||| |||||||||
Sbjct  233  GATGGCAAGTGGCGAAA-AAGAAGAAGCTGAAACGA-AGATGAAGAGAGGAAATAGAGAG  290

Query  238  acagagagaaaagcaagcaaaagTGTTGAAGAGGATGGACTCGTTGCTTACACTGCTGAT  297
            |||||||||||  ||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct  291  ACAGAGAGAAACTCAAGCAAAAGTGTTGAAGAAGATGGACTTGTAGCTTACACTGCTGAT  350

Query  298  TATTGGAGAGCTAAGCATCATCCTCCCAAGAACAACTAA  336
            |||||||||||||||||||||||||||||||||||||||
Sbjct  351  TATTGGAGAGCTAAGCATCATCCTCCCAAGAACAACTAA  389



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15683537688


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5