BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg896386

Length=336
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G04045.1 | Symbols:  | Defensin-like (DEFL) family protein |...   444    3e-124


> AT2G04045.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr2:1314763-1315302 FORWARD LENGTH=439
Length=439

 Score =  444 bits (240),  Expect = 3e-124
 Identities = 306/338 (91%), Gaps = 4/338 (1%)
 Strand=Plus/Plus

Query  1    ATGGCATCAAAAATCACATTCTTCTTCTTCATTGCTCTCGTTATCGATTGTGCGATGATG  60
            ||||||||||||||||||||| ||||| || ||| | |||||||| ||||||||||||| 
Sbjct  26   ATGGCATCAAAAATCACATTCGTCTTCCTCGTTGTTGTCGTTATCAATTGTGCGATGAT-  84

Query  61   GTT-ACTACG-CAGACAGCAGAAGCTCAGATCTTTCTTCCTTGCGTGACAACGAAAGATT  118
            ||| | || | || |||||||||||||| | ||||||||||||||| | |||||| ||||
Sbjct  85   GTTGAGTATGCCA-ACAGCAGAAGCTCATAACTTTCTTCCTTGCGTTATAACGAATGATT  143

Query  119  GTGAATACCTTCACTGCTCAAGCGGGACAGCTCTATGTGTAAACAGACAATGCCAATGTA  178
            ||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct  144  GTGAATACCATCACTGCTCAAGCGGGACAGTTCTATGTGTAAACAGACAATGCCATTGTA  203

Query  179  GCCGTTCATCGATTCATCAAACCAAACTCGACAACTTAAAGACGATGGACTCTGCTAAGA  238
            | |||||||| | ||||||||| ||||||||||||||||||| |||||||| ||| ||||
Sbjct  204  GTCGTTCATCAACTCATCAAACAAAACTCGACAACTTAAAGAAGATGGACTATGCGAAGA  263

Query  239  AGTGCAAGTGGACACAGGATTGTGATCCTCGTATGAGATTTACATGCGTCTCCGGTTCTT  298
            |||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||
Sbjct  264  AGTGCAAGTGGACAAAAGATTGTGATCCTCGTATGAGATTTACATGTGTCTCCGGTTCTT  323

Query  299  ATATGTGTTTTGATGGCCTATGTACTTGTACGAATTAA  336
            ||||||||||||||||||||||||| ||||| ||||||
Sbjct  324  ATATGTGTTTTGATGGCCTATGTACGTGTACCAATTAA  361



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15683537688


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5