BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896391
Length=534
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25540.1 | Symbols: LAG1 | TRAM, LAG1 and CLN8 (TLC) lipid-s... 900 0.0
> AT3G25540.1 | Symbols: LAG1 | TRAM, LAG1 and CLN8 (TLC) lipid-sensing
domain containing protein | chr3:9274335-9276685 FORWARD
LENGTH=1682
Length=1682
Score = 900 bits (487), Expect = 0.0
Identities = 517/532 (97%), Gaps = 0/532 (0%)
Strand=Plus/Plus
Query 1 ATGTTTGCTGCTGGATTCTACACGTACTCTATATTCGCGTTGGTGTTTTGGGAAACAAGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 ATGTTTGCTGCTGGATTCTACACGTACTCTATATTCGCGTTGGTGTTTTGGGAAACAAGA 784
Query 61 CGGTCTGATTTCGGAGTTTCGATGGGTCATCATATCACAACTCTTGTTCTCATTGTCCTC 120
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 785 CGGTCTGATTTCGGAGTTTCCATGGGTCATCATATCACAACGCTTGTTCTCATTGTCCTC 844
Query 121 TCCTATATCTGCAGATTAACTCGTGCTGGTTCTGTTATTCTTGCACTTCATGATGCGAGC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 TCCTATATCTGCAGATTAACTCGTGCTGGTTCTGTTATTCTTGCACTTCATGATGCGAGC 904
Query 181 GATGTGTTCCTTGAAATTGGGAAAATGTCGAAGTATTGCGGAGCTGAAAGTCTCGCGAGC 240
||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 905 GATGTGTTCCTTGAAATTGGGAAAATGTCTAAATATTGCGGAGCGGAAAGTCTCGCGAGC 964
Query 241 ATTTCGTTTGTTCTTTTCGCTTTGTCTTGGGTCGTTCTACGTCTCATTTACTATCCTTTT 300
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 965 ATTTCGTTTGTTCTTTTCGCGCTGTCTTGGGTCGTTCTACGTCTCATTTACTATCCTTTT 1024
Query 301 TGGATCCTGTGGAGCACAAGCTATCAAATTATTATGACTGTGGACAAAGAAAAGCATCCT 360
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1025 TGGATCCTGTGGAGCACGAGCTATCAAATCATTATGACTGTGGACAAAGAAAAGCATCCT 1084
Query 361 AATGGGCCGATCTTGTACTATATGTTCAACACACTACTGTATTTTTTGCTTGTTCTTCAT 420
||||| || |||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1085 AATGGACCAATCTTGTACTATATGTTCAACACACTTTTGTATTTCTTGCTTGTTCTTCAC 1144
Query 421 ATATTCTGGTGGGTTTTGATTTACCGGATGCTTGTGAAACAAGTGCAAGATCGAGGCAAG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 ATATTCTGGTGGGTTTTGATTTACCGGATGCTTGTGAAACAAGTGCAAGATCGAGGCAAG 1204
Query 481 CTTAGCGAAGATGTTAGATCCGATTCTGAAAGCGATGATGAACACGAGGATT 532
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1205 CTTAGCGAAGATGTTAGATCCGATTCTGAAAGCGATGATGAACACGAGGATT 1256
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25569180823
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5