BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg896392

Length=549
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G53860.1 | Symbols:  | Remorin family protein | chr1:2010710...   828    0.0  


> AT1G53860.1 | Symbols:  | Remorin family protein | chr1:20107107-20109511 
REVERSE LENGTH=1440
Length=1440

 Score =  828 bits (448),  Expect = 0.0
 Identities = 502/528 (95%), Gaps = 3/528 (1%)
 Strand=Plus/Plus

Query  18   CTCAAATGTTAGCACAAACCCATTTGGAGAAGACTCACTTGCAAACAGAATCAACCTAAA  77
            ||||||||||||| | |||||||||| ||||||||||||| ||| ||||||||| |||||
Sbjct  131  CTCAAATGTTAGCGCCAACCCATTTGCAGAAGACTCACTTACAAGCAGAATCAATCTAAA  190

Query  78   GGAAACTACAGATTTCATAAAGTCACTGCCAAATTCATCAAACCAAAGCAGTAGCAGCAG  137
            |||||||||||||||||| |||||||| |||| ||||||||||||||||||||| |||||
Sbjct  191  GGAAACTACAGATTTCATCAAGTCACTTCCAATTTCATCAAACCAAAGCAGTAGTAGCAG  250

Query  138  CAGCAGTGAGATGGTAAACGAAAGAAGACCAAGTTTCTCATCACAAAAGAGCATTGGAGA  197
            ||  | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  251  CA--A-TGAGATGGTAAACGAGAGAAGACCAAGTTTCTCATCACAAAAGAGCATTGGAGA  307

Query  198  AGGAAGAAGCAATGGACAGAGAAGATTGATGTTAATGGAGTCTCCTTGTACTCCAGGTAG  257
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  308  AGGAAGAAGCAATGGACAAAGAAGATTGATGTTAATGGAGTCTCCTTGTACTCCAGGTAG  367

Query  258  AGGAGTCTTCAGTTTCAGTAGCAATGTCTCGGGTAGAAGAAGAAACTTTCCTTCTAAATG  317
            |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct  368  AGGAGTCTTCAGTTTCAGTAGCAATGTCTCTGGTAGAAGAAGAAACTTCCCTTCTAAATG  427

Query  318  GATTGATGCTGAGAAATGGGTCACTTCCTCCGGTCATGATTCTCCAGCACATTCCCTCAA  377
            |||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct  428  GATTGATGCTGAGAAATGGGTCACTTCCTCTGGTCATGACTCTCCAGCACATTCTCTCAA  487

Query  378  AAACACCCAATTTGATGGTTTTAAACACCAGGTGGAAGTTGTTTATTCAGAGAAATCTAG  437
            ||||| |||||||||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct  488  AAACAACCAATTTGATGGGTTTAAACACCAGGTGGAAGTTGTATACTCAGAGAAATCTAG  547

Query  438  GGTTACGGAAGAATGTTTCCATGGATCTGTCTCATTATCTCCACAAGATCTTATCCTTAA  497
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  548  GGTTACAGAAGAATGTTTCCATGGATCTGTCTCATTATCTCCACAAGATCTTATCCTTAA  607

Query  498  AGATAAGTTAGCAAACGAAGTTCCACAGATTCTTCCATCAACGGAAGG  545
            |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  608  AGATAAGTTAGCAAACGAAGTTCCTCAGATTCTTCCATCAACGGAAGG  655



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26322693028


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5