BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg896392 Length=549 Score E Sequences producing significant alignments: (Bits) Value AT1G53860.1 | Symbols: | Remorin family protein | chr1:2010710... 828 0.0 > AT1G53860.1 | Symbols: | Remorin family protein | chr1:20107107-20109511 REVERSE LENGTH=1440 Length=1440 Score = 828 bits (448), Expect = 0.0 Identities = 502/528 (95%), Gaps = 3/528 (1%) Strand=Plus/Plus Query 18 CTCAAATGTTAGCACAAACCCATTTGGAGAAGACTCACTTGCAAACAGAATCAACCTAAA 77 ||||||||||||| | |||||||||| ||||||||||||| ||| ||||||||| ||||| Sbjct 131 CTCAAATGTTAGCGCCAACCCATTTGCAGAAGACTCACTTACAAGCAGAATCAATCTAAA 190 Query 78 GGAAACTACAGATTTCATAAAGTCACTGCCAAATTCATCAAACCAAAGCAGTAGCAGCAG 137 |||||||||||||||||| |||||||| |||| ||||||||||||||||||||| ||||| Sbjct 191 GGAAACTACAGATTTCATCAAGTCACTTCCAATTTCATCAAACCAAAGCAGTAGTAGCAG 250 Query 138 CAGCAGTGAGATGGTAAACGAAAGAAGACCAAGTTTCTCATCACAAAAGAGCATTGGAGA 197 || | ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 251 CA--A-TGAGATGGTAAACGAGAGAAGACCAAGTTTCTCATCACAAAAGAGCATTGGAGA 307 Query 198 AGGAAGAAGCAATGGACAGAGAAGATTGATGTTAATGGAGTCTCCTTGTACTCCAGGTAG 257 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 308 AGGAAGAAGCAATGGACAAAGAAGATTGATGTTAATGGAGTCTCCTTGTACTCCAGGTAG 367 Query 258 AGGAGTCTTCAGTTTCAGTAGCAATGTCTCGGGTAGAAGAAGAAACTTTCCTTCTAAATG 317 |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 368 AGGAGTCTTCAGTTTCAGTAGCAATGTCTCTGGTAGAAGAAGAAACTTCCCTTCTAAATG 427 Query 318 GATTGATGCTGAGAAATGGGTCACTTCCTCCGGTCATGATTCTCCAGCACATTCCCTCAA 377 |||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| Sbjct 428 GATTGATGCTGAGAAATGGGTCACTTCCTCTGGTCATGACTCTCCAGCACATTCTCTCAA 487 Query 378 AAACACCCAATTTGATGGTTTTAAACACCAGGTGGAAGTTGTTTATTCAGAGAAATCTAG 437 ||||| |||||||||||| ||||||||||||||||||||||| || |||||||||||||| Sbjct 488 AAACAACCAATTTGATGGGTTTAAACACCAGGTGGAAGTTGTATACTCAGAGAAATCTAG 547 Query 438 GGTTACGGAAGAATGTTTCCATGGATCTGTCTCATTATCTCCACAAGATCTTATCCTTAA 497 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 548 GGTTACAGAAGAATGTTTCCATGGATCTGTCTCATTATCTCCACAAGATCTTATCCTTAA 607 Query 498 AGATAAGTTAGCAAACGAAGTTCCACAGATTCTTCCATCAACGGAAGG 545 |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 608 AGATAAGTTAGCAAACGAAGTTCCTCAGATTCTTCCATCAACGGAAGG 655 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26322693028 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5