BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896393
Length=213
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15530.5 | Symbols: PPDK | pyruvate orthophosphate dikinase ... 363 5e-100
> AT4G15530.5 | Symbols: PPDK | pyruvate orthophosphate dikinase
| chr4:8864828-8870801 REVERSE LENGTH=2945
Length=2945
Score = 363 bits (196), Expect = 5e-100
Identities = 210/216 (97%), Gaps = 3/216 (1%)
Strand=Plus/Plus
Query 1 GTTCTTGATCAGCAAGGTGTAGGGCAATTGATCAAGATGGCGACAGAAAAAGGACGAGCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2730 GTTCTTGATCAGCAAGGTGTAGGGCAATTGATCAAGATGGCGACAGAAAAAGGACGAGCA 2789
Query 61 GCTATGCCTAGCCTCAAGGTTGGGATATGTGGAGAACATGGAGGAGATCCATCGTCTGTG 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2790 GCTAGGCCTAGCCTCAAGGTTGGGATATGTGGAGAACATGGAGGAGATCCATCTTCTGTG 2849
Query 121 GGATTCTTTGCTGAAGCAGGACTTGACTATGTCTCTTGTTCTCCTTTCAGAGTTCCAATT 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2850 GGATTCTTTGCTGAAGCAGGACTTGACTATGTCTCTTGTTCTCCTTTCAGGGTTCCAATT 2909
Query 181 GCAAGGCTTGCAGCTGCTCAAGT--T-GTTGCATGA 213
||||||||||||||||||||||| | |||||||||
Sbjct 2910 GCAAGGCTTGCAGCTGCTCAAGTAGTTGTTGCATGA 2945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9500604561
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5