BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg896399

Length=336
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G25573.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   139    1e-32


> AT3G25573.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; Has 30201 Blast hits to 
17322 proteins in 780 species: Archae - 12; Bacteria - 1396; 
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; 
Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:9290313-9290810 
FORWARD LENGTH=498
Length=498

 Score =  139 bits (75),  Expect = 1e-32
 Identities = 89/96 (93%), Gaps = 0/96 (0%)
 Strand=Plus/Plus

Query  159  GGCCGTTGTAGCTGTGGTTCAGCAGCGGGAATTTCTCATGGATATAGCCACGATGAAGAA  218
            ||| || |||| |||||||||||| ||||||||||||||||| ||||||| || ||||||
Sbjct  78   GGCTGTCGTAGTTGTGGTTCAGCATCGGGAATTTCTCATGGAGATAGCCATGAAGAAGAA  137

Query  219  GGAGAATAAGGCGGAGAAGAAGAACTTGAAGGAGGA  254
            ||||||||||||||||||||||||||||||||||||
Sbjct  138  GGAGAATAAGGCGGAGAAGAAGAACTTGAAGGAGGA  173



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15683537688


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5