BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896412
Length=267
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25640.1 | Symbols: | Protein of unknown function, DUF617 |... 309 8e-84
> AT3G25640.1 | Symbols: | Protein of unknown function, DUF617
| chr3:9333719-9334804 FORWARD LENGTH=1086
Length=1086
Score = 309 bits (167), Expect = 8e-84
Identities = 195/208 (94%), Gaps = 3/208 (1%)
Strand=Plus/Plus
Query 63 AATGGGTGCTGGAGTTTTACCGGCGGC-A--ACGACGGTGGATGAAGAAGGGAATGGAGC 119
||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 653 AATGGGTGCTGGAGTTTTACCGGCGACTACGACGACGGTGGATGAAGAAGGGAATGGAGC 712
Query 120 GGTTGGGTCCGGAAAAGGTGAGCTCATGTATATGAGAGCCCGGTTCGAGCGGGTTATCGG 179
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 713 GGTTGGGTCCGAAAAAGGTGAACTCATGTATATGAGAGCCCGGTTCGAGCGGGTTGTCGG 772
Query 180 GTCGAGAGACTTGGAGGCGTTTTATATCATGAATCCTGATGTGTCAAGTGGTGGACCTAA 239
||||||||||| |||||||||||| || ||||| |||||||||||||||||||||||| |
Sbjct 773 GTCGAGAGACTCGGAGGCGTTTTACATGATGAACCCTGATGTGTCAAGTGGTGGACCTGA 832
Query 240 GCATAGTGTGTATTTTCTAAGGGTTTAA 267
|| |||||||||||||||||||||||||
Sbjct 833 GCTTAGTGTGTATTTTCTAAGGGTTTAA 860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12215063007
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5