BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896416
Length=1428
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25670.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 2206 0.0
AT1G13230.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 830 0.0
> AT3G25670.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr3:9344532-9346301 REVERSE LENGTH=1428
Length=1428
Score = 2206 bits (1194), Expect = 0.0
Identities = 1355/1433 (95%), Gaps = 10/1433 (1%)
Strand=Plus/Plus
Query 1 ATGTCTTGGATTCACTCT-GTTTTGTTCCTTTTTCTAACCT-TCCGGTGGTGCGTTACCG 58
|||||||||||||| | | ||||| ||||||| ||||| || ||| ||| |||||||| |
Sbjct 1 ATGTCTTGGATTCA-TTTGGTTTTATTCCTTTGTCTAA-CTCTCCTGTGTTGCGTTACTG 58
Query 59 GAGAATCATCACCGGAAGTCACTGATGATGGAGCTCCGATGGAGAAAACAGAACAAGAAG 118
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 59 GAGAATTATCACCGGAAGGCACTGATGATGGAGCTCCGATGGAGAAAACAGAACAAGAAG 118
Query 119 CTCTTTACTCAGCTATTCAAGGATTTGTTGGTGATTCTTGGAATGGTTCTGATCTTTACC 178
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 119 CTCTTTACTCAGCTATTCAAGGGTTTGTTGGTGATTCTTGGAATGGTTCTGATCTTTATC 178
Query 179 CTGACCCTTGTGGTTGGACTCCTATTCAGGGTGTTTCTTGTGATCTTTATGGTGACTTGT 238
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CTGATCCTTGTGGTTGGACTCCTATTCAGGGTGTTTCTTGTGATCTTTATGGTGACTTGT 238
Query 239 GGTATGTCACGGATCTAACCCTAGGTCTCGTTCATGAAAACTCGCTTTCTTGCGGTGCAA 298
|||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||
Sbjct 239 GGTATGTCACGGATCTAACCCTAGGTCTTGTTCATGAAAACTCACTTTCTTGCGCCACAA 298
Query 299 GTTTGAAGATAAAGCCACAGTTGTTCAAACTCAAGCACTTGAAATCTCTCACGTTCTTCA 358
||||| |||||||||||||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct 299 GTTTGGAGATAAAGCCACAGTTATTCAAGCTCAAGCACTTGAAATCACTCACGTTCTTCA 358
Query 359 ACTGCTTCACTTCGCCGATAACAATACCTAAAGAGGATTGGATTAACTTGGCAAGTAACT 418
|||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 359 ACTGCTTCACGTCGCCGATAAGAATACCTAAAGAGGATTGGATAAACTTGGCAAGTAACT 418
Query 419 TAGAATCTCTCGAGTTTAGATCCAATCCTGGTTTGATTGGTGAACTTCCTGAAACAATTG 478
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TAGAATCACTCGAGTTTAGATCCAATCCTGGTTTGATTGGTGAACTTCCTGAAACAATTG 478
Query 479 GATGTCTCACAAAGCTGAAGTCTTTGGTGGTTCTTGAAAACGGGTTTAACGGGAAGTTAC 538
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GAAGTCTCACAAAGCTGAAGTCTTTGGTGGTTCTTGAAAACGGGTTTAACGGGAAGTTAC 538
Query 539 CGACGAGTCTCTGCAATTTAACTAGGTTAAAACGGTTGGTTCTGGCGGGAAACTTGTTCA 598
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 539 CGACGAGAATCTGCAATTTAACTAGGTTAAAGCGGTTGGTTCTGGCGGGAAACTTGTTCA 598
Query 599 C-GGGAACGATTCCGGATTGTTTTAATGGGTTTAAGGATTTACTGATCTTGGATATGAGT 657
| ||| ||||||||||||||||| || |||||||||||| ||||||||||||||||||||
Sbjct 599 CTGGG-ACGATTCCGGATTGTTTCAACGGGTTTAAGGATCTACTGATCTTGGATATGAGT 657
Query 658 CGGAACTTAATCTCAGGGACATTGCCTTCGTCCATTGGAGAGATGGTTTCATTGCTTAAG 717
||||||| | ||||||||| |||||||| ||| ||||||||||||||||||||||||||
Sbjct 658 CGGAACTCATTCTCAGGGATATTGCCTTTGTCTGTTGGAGAGATGGTTTCATTGCTTAAG 717
Query 718 CTTGACCTAAGCAATAACCACTTAGAAGGCAAGTTACCTCAAGAAATCGGGTTTTTGAAG 777
|||||||||||||||||||| |||||||| | ||| ||||||||||||||||||||||||
Sbjct 718 CTTGACCTAAGCAATAACCAATTAGAAGGGAGGTTGCCTCAAGAAATCGGGTTTTTGAAG 777
Query 778 AATCTGACACTGTTGGATCTTAGGAACAACATAATCTCTGGAGGGTTGTTCGAAAACGTC 837
||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||| ||
Sbjct 778 AATCTGACACTTTTGGATCTAAGGAACAACAGAATCTCTGGAGGGTTGTTCGAAAACATC 837
Query 838 GTAAAGATTCGATCTTTAACGGATCTTGTTTTATCAGGGAACCCAATGGGCAGTGATGAC 897
| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GAAAAGATTCCATCTCTAACGGATCTTGTTTTATCAGGGAACCCAATGGGCAGTGATGAC 897
Query 898 ATGATGGGAATAAAGTGGGAGAATATGGGCAATTTGGTCATTTTGGATCTGTCAAAGATG 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 ATGATGGGAATAAAGTGGGAGAATATGGGCAATTTGGTCATTTTGGATCTGTCAAAGATG 957
Query 958 GGTTTAAGAGGTGAGATTCCTTTAGGTTTAACAAGTTTGAAAAGATTGAGGTTTCTTGGT 1017
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 958 GGTTTAAGAGGTGAGGTTCCTTTAGGTTTAACAAGTTTGAGAAGATTGAGGTTTCTTGGT 1017
Query 1018 CTCAACGACAACAATTTAACCGGCACTGTCCCATCGAGAAG-GCTCGAGACATTGCCTTG 1076
|||||||||||||| || ||||||||||||||||| | ||| ||||||||||||||||||
Sbjct 1018 CTCAACGACAACAACTTGACCGGCACTGTCCCATCAA-AAGAGCTCGAGACATTGCCTTG 1076
Query 1077 TCTTGGTGCTCTCTACATCAATGGAAACAATCTATCAGGAGAGCTT-GAATTCTCAAGAA 1135
|||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1077 TCTTGGTGCTCTATACATCAATGGAAACAATCTATCAGGAGAGCTAAGA-TTCTCAAGAA 1135
Query 1136 AGTTCTATGAGAAGATGGGAACGAGATTTAAGGCTTCAAAGAATCCAAATCTTTGTCAGC 1195
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1136 AGTTCTATGAGAAGATGGGAACAAGGTTTAAGGCTTCAAAGAATCCAAATCTTTGTCAGG 1195
Query 1196 ATGTCGTGTCAGAAGCTCAGCAATATGTTGTTGGATTGAAGTCTTGCATGATGGAGAAGA 1255
|||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 ATGTTGTGTCAGAATCTCGGCAATATGTTGTTGGATTGAAGTCTTGCATGATGGAGAAGG 1255
Query 1256 CAGGGGGTAGTTCGGTAATTAAACAAACGTGGAGCAACCTTAAGGAGGAGGATGAGTCAA 1315
||| || ||||| ||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1256 CAGAGGATAGTTTGGTAATTAAACAAACTTGGAGCAACCTTAAGAAGGAGGATGAGTCAA 1315
Query 1316 GTTCATCAATGGGTGTGATGGTTACTAGACACGTGTTGTTGTCAAATGGGTTCATGTGGG 1375
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1316 GTTCATCAATGGGTGTGATGGTTACTAGACATGTGTTGTTGTCAAATGGGTTCATGTGGG 1375
Query 1376 ATTTGCTTTTGGAGCTTTCTCTTATATTATTATTGAATTTGTTAGTTTGTTAA 1428
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 ATTTGCTTTTGGAGCTTTCTCTTATATTATTATTGAATTTGTTAGTTTGTTAA 1428
> AT1G13230.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr1:4520631-4522544 FORWARD LENGTH=1428
Length=1428
Score = 830 bits (449), Expect = 0.0
Identities = 935/1164 (80%), Gaps = 56/1164 (5%)
Strand=Plus/Plus
Query 61 GAATCATCACCGGAAGTCACTGA---TGATGGAGCTCCGATGGAGAAAACAGAACAAGAA 117
||||| | ||| ||||| ||||| ||| | |||||| ||||| |||| ||||| |||
Sbjct 115 GAATCTTTACCTGAAGTAACTGATTCTGAAGAAGCTCCAATGGACAAAAGAGAACGTGAA 174
Query 118 GCTCTT-TACTCAGCTATTCAAGGATTTGTTGGTGATTCTTGGAATGGTTCTGATCTTTA 176
|| ||| ||||| || ||||||||||||||||||||||||||||| || |||| ||| ||
Sbjct 175 GC-CTTGTACTCTGCGATTCAAGGATTTGTTGGTGATTCTTGGAACGGATCTGCTCTCTA 233
Query 177 CCCTGACCCTTGTGGTTGGACTCCTATTCAGGGTGTTTCTTGTGATC-TTTATGGTGACT 235
||||| ||||||||||||||||| |||||||||||||||||||| | | || ||||
Sbjct 234 TCCTGATCCTTGTGGTTGGACTCCAATTCAGGGTGTTTCTTGTGA-CATCTACAATGACC 292
Query 236 TGTGGTATGTCACGGATCTAACCCTAGGTCTCGTTCATGAAAACTCGCTTTCTTGC-GGT 294
||||||||||||||||| | | |||| || || |||||||||||||| ||||| |
Sbjct 293 TGTGGTATGTCACGGATTTGAGTTTAGGGCTTATTTATGAAAACTCGCTTCCTTGCTCCT 352
Query 295 GCAAGT-TTGAAGATAAAG-CCACAGTTGTTCAAACTCAAGCACTTGAA-ATCTCTCACG 351
||||| || |||| ||| ||| |||| || | |||||||| || || ||||||| |
Sbjct 353 -CAAGTCTT-CAGAT-AAGACCAGAGTTATTTGAGCTCAAGCA-TTTAAGATCTCTCTCC 408
Query 352 TTCTTCAACTGCTTCACT-TCGCCGATAACAATACCTAAAGAGGA--T-TGGATTAACTT 407
|||||||||||||| | | || || || ||| |||||||||| | |||| |||||
Sbjct 409 TTCTTCAACTGCTTTA-TCTCTCCCATGGTGATAGCTAAAGAGGAGTTGTGGACAAACTT 467
Query 408 GGCAAGTAACTTAGAATCTCTCGAGTTTAGATCCAATCCTGGTTTGATTGGTGAACTTCC 467
||| ||||||||||||||||||||||||||||||||| ||| | ||||| ||||||||
Sbjct 468 TGCATCTAACTTAGAATCTCTCGAGTTTAGATCCAATCCCGGTCTCATTGGGGAACTTCC 527
Query 468 TGAAACAATTGGATGTCTCACAAAGCTGAAGTCTTTGGTGGTTCTTGAAAACGGGTTTAA 527
||||||||||||| ||||||||||||||||||||| |||||||| ||||| || ||||
Sbjct 528 TGAAACAATTGGAAATCTCACAAAGCTGAAGTCTTTAGTGGTTCTCGAAAATGGATTTAG 587
Query 528 CGG-GAAGTTACC-GACGAGTCTCTGCAATTTAACTAGGTTAAA-ACGGTTGGTTCTGGC 584
|| || | |||| | ||||| ||||||| |||| || |||| | || ||||| | ||
Sbjct 588 TGGAGA-GCTACCCG-CGAGTATCTGCAACTTAAAGAGACTAAAGA-GGCTGGTTTTCGC 644
Query 585 -GGGAAACTTGTTCACGGGAACGATTCCGGATTGTTTTAATGGGTTTAAGGATTTACT-G 642
||||| || ||| |||||| ||| || | ||||| || ||||| || || | || |
Sbjct 645 AGGGAA-CTCGTTTGCGGGAATGATCCCAAACTGTTTCAAAGGGTTAAAAGAGCT-CTTG 702
Query 643 ATCTTGGATATGAGTCGGAACT-TAATCTCAGGGACATTGCCTTCGTCCATTGGAGAGAT 701
||||||||| |||| || |||| | ||||||||||||||||| | || ||||||| |
Sbjct 703 ATCTTGGATTTGAGCCGCAACTCTT-TCTCAGGGACATTGCCTACATCTTTTGGAGATTT 761
Query 702 GGTTTCATTGCTTAAGCTTGACCTAAGCAATAACCACTTAGAAGGCAAGTTACCTCAAGA 761
|||||||||||| |||||||||||||||||||||| ||||||||| || |||||||||||
Sbjct 762 GGTTTCATTGCTCAAGCTTGACCTAAGCAATAACCTCTTAGAAGGGAACTTACCTCAAGA 821
Query 762 AATCGGGTTTTTGAAGAATCTGACACTGTTGGATCTTAGGAACAACATAATCTCTGGAGG 821
| | || |||||||||||| ||||||| ||||| || |||||||||| | ||||||| ||
Sbjct 822 ACTAGGATTTTTGAAGAATTTGACACTTTTGGACCTGAGGAACAACAGATTCTCTGGTGG 881
Query 822 GTTGTTCGAA-AACGTCGTAAAGATTCGATCTTTAACGGATCTT-GTTTTATC-AGGGAA 878
| ||| | || || | | ||| || | |||| ||||||| || |||||||| | ||
Sbjct 882 GCTGTCC-AAGAATATTGAAAATATCCAATCTCTAACGGAA-TTAGTTTTATCTAAC-AA 938
Query 879 CCCAATGGGC-AGTGATGACATGATGGGAATAAAGTGGGAGAATATGGGCAATTTGGTCA 937
|||||||| | || || ||| |||||| ||| |||| ||| ||| |||||||||| |
Sbjct 939 TCCAATGGGTGAA-GAGGATATGGTGGGAACAAATTGGGGGAAGATGAGCAATTTGGT-A 996
Query 938 -TTTTGGATCTG-TC-AAAGATGGGTTTAAGAGGTGAGATTCCTTTAGGTTTAAC-AAGT 993
||||||| || || ||| |||||||| ||||||||||||||| | || |||| ||
Sbjct 997 GTTTTGGA-CTTATCCAAA-ATGGGTTTGAGAGGTGAGATTCCTACAAGTCTAACCAACC 1054
Query 994 TTGAAAAGATTGAGGTTTCTTGGTCTCAACGACAACAATTTAACCGGCACTGTCCCATCG 1053
| ||| || || |||||||||||||| ||| |||||||| ||||||| ||| ||||||
Sbjct 1055 T-GAAGAGGTTAAGGTTTCTTGGTCTGAACAACAACAATCTAACCGGTTTTGTTCCATCG 1113
Query 1054 A-GAAGGCTCGA-GACATTGCCTTGTCTTGGTGCTCTCTACATCAATGGAAACAATCTAT 1111
| |||| || || | | |||||||| ||||||||| | ||||||||||||||||| |||
Sbjct 1114 AAGAAG-CTTGAAG-CTTTGCCTTGCCTTGGTGCTTTATACATCAATGGAAACAACCTAA 1171
Query 1112 CAGGAGAGCTT-GAATTCTCAAGAAAGTTCTATGAGAAGATGGGAACGA-GATTTAAGGC 1169
|||| |||||| || ||||| | ||||||||||||||||||||||| || ||||||| ||
Sbjct 1172 CAGGTGAGCTTAGA-TTCTCTACAAAGTTCTATGAGAAGATGGGAA-GAAGATTTAAAGC 1229
Query 1170 TTCAAAGAATCCAAATCTTTGTCA 1193
|||||||||||||||||| |||||
Sbjct 1230 TTCAAAGAATCCAAATCTGTGTCA 1253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70381164090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5