BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg896438

Length=738
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G10930.1 | Symbols: CIPK5, SnRK3.24 | CBL-interacting protei...   734    0.0  


> AT5G10930.1 | Symbols: CIPK5, SnRK3.24 | CBL-interacting protein 
kinase 5 | chr5:3445366-3447114 REVERSE LENGTH=1749
Length=1749

 Score =  734 bits (397),  Expect = 0.0
 Identities = 479/518 (92%), Gaps = 7/518 (1%)
 Strand=Plus/Plus

Query  178   GCGGATTTTGAATTTCCGCCGTGGTTTTCGCCTGAATCGAGGCGGTTGATTTCTAAACTC  237
             ||||||||||||||||||||||||||||| || ||| ||||| |||||||||| ||||||
Sbjct  890   GCGGATTTTGAATTTCCGCCGTGGTTTTCTCCGGAAGCGAGGAGGTTGATTTCGAAACTC  949

Query  238   CCCGTCGTAGATCCAGATCGACGGATCTTGATTCCGGCGATTATGAGAACGACTTGGCTT  297
             | ||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||| 
Sbjct  950   CTCGTTGTAGATCCAGATCGACGGATCTCGATTCCGGCGATTATGAGAACGCCTTGGCTC  1009

Query  298   CAGAAAAACTTCACTCCGCCGTTAGCTTTCAAAATCGACGAACCGATTTGTTCTC--AG-  354
             | |||||||||||||||||||||||||||||||||||||||||||||||||||||  || 
Sbjct  1010  CGGAAAAACTTCACTCCGCCGTTAGCTTTCAAAATCGACGAACCGATTTGTTCTCAAAGC  1069

Query  355   AGCAACAACAAC-AACGAAGAAGAAGACGACGTAGATTGGGAAAATCAAACAGAGCCGAT  413
             ||||| |||||| || ||||||||||| |||| |||||| ||||||||||||||||||||
Sbjct  1070  AGCAAAAACAACGAA-GAAGAAGAAGAAGACGGAGATTGTGAAAATCAAACAGAGCCGAT  1128

Query  414   TTCGCCAAAATTCTTCAACGCTTTCGAATTCATCTCCTCGATGTCTTCCGGATTCGATC-  472
              ||||| |||||||||||||||||||||||||| |||||||||||||||||||| || | 
Sbjct  1129  ATCGCCGAAATTCTTCAACGCTTTCGAATTCATATCCTCGATGTCTTCCGGATTTGA-CT  1187

Query  473   TCTCGAGCTTGTTCGAGAGTAAGAGGAAAGTGAAATCGGTGTTCACGTCAAAATCGTTGG  532
             | ||||||||||||||||| |||||||||||| |||||||||| ||||||   |||| ||
Sbjct  1188  TATCGAGCTTGTTCGAGAGCAAGAGGAAAGTGCAATCGGTGTTTACGTCACGGTCGTCGG  1247

Query  533   CGACGGAGGTAATGGAGAGGATCGAAACGGTTACGAAAGAGATGAACATGAAAGTGAAGA  592
             |||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||
Sbjct  1248  CGACGGAGGTAATGGAGAAGATAGAAACGGTTACGAAGGAGATGAACATGAAAGTGAAGA  1307

Query  593   GAACGAAGGATTTTAAAGTGAAGATGGAAGGGAAAACGGAAGGGAGAAAAGGACGGCTGT  652
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  1308  GAACGAAGGATTTTAAAGTGAAGATGGAAGGGAAAACGGAAGGGAGAAAAGGACGGTTGT  1367

Query  653   CGATGACGGCGGAAGTGTTTGAAGTAGCGCCAGAGATA  690
             ||||||||||||||||||||||||||||||| ||||||
Sbjct  1368  CGATGACGGCGGAAGTGTTTGAAGTAGCGCCGGAGATA  1405



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35816946811


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5