BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg896439 Length=345 Score E Sequences producing significant alignments: (Bits) Value AT3G25855.1 | Symbols: | Copper transport protein family | chr... 483 6e-136 > AT3G25855.1 | Symbols: | Copper transport protein family | chr3:9459421-9460295 REVERSE LENGTH=554 Length=554 Score = 483 bits (261), Expect = 6e-136 Identities = 320/347 (92%), Gaps = 10/347 (3%) Strand=Plus/Plus Query 1 ATGTCGGAAAAGAAGCAATATTGTGTTGTGATGCGGATTAACTTGGATTGCAATGCTTGT 60 ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| Sbjct 29 ATGTCGGAAAAGAAGCAATGTTGTGTTGTGATGAGGATTAACTTGGATTGCAATGCTTGT 88 Query 61 TGTAGAAAAGCAAGGAGGATTATCATCAATATGAAAGAAGTTGACACACACATGATCAAC 120 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 89 TGTAGAAAAGCTAGGAGGATTATCATCAATATGAAAGAAGTTGATACACACATGATCAAC 148 Query 121 AAAAAAGAACGTCAAGTAATCCTTTGCGGACGGTTTAGACCATCGGACGTTGCAGTAAAA 180 ||||| |||||||||||||||||||||||||||||| ||||||| || |||||| ||||| Sbjct 149 AAAAAGGAACGTCAAGTAATCCTTTGCGGACGGTTTCGACCATCCGATGTTGCATTAAAA 208 Query 181 CTGCAAAAGAAGATGAAACGGAGGGTTGAGATTCTCGAAGTTGAAGATCTCGCCAATGGC 240 ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 209 CTGCAAAGGAAGATGAAACGGAGGGTTGAGATTCTCGAAGTTGAAGATCTCACCAATGGC 268 Query 241 CATGGAGGAGAAGAAGGACAGGAATATGAGC-CAGAGCCACCATATGAACAGCCATATGA 299 |||||||||||||||||| || |||| | |||| ||| |||||||||||| |||| Sbjct 269 CATGGAGGAGAAGAAGGA-AGC-----GAGCAC-GAGCTACCGTATGAACAGCCACATGA 321 Query 300 ATATTCTCAA-CAATCTGATCACATGACCACACCATTGTTGTGTTAG 345 ||||||| || ||| ||||||| |||||||||||||||||||||||| Sbjct 322 ATATTCT-AATCAACCTGATCAGATGACCACACCATTGTTGTGTTAG 367 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16135947429 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5