BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg896439

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G25855.1 | Symbols:  | Copper transport protein family | chr...   483    6e-136


> AT3G25855.1 | Symbols:  | Copper transport protein family | chr3:9459421-9460295 
REVERSE LENGTH=554
Length=554

 Score =  483 bits (261),  Expect = 6e-136
 Identities = 320/347 (92%), Gaps = 10/347 (3%)
 Strand=Plus/Plus

Query  1    ATGTCGGAAAAGAAGCAATATTGTGTTGTGATGCGGATTAACTTGGATTGCAATGCTTGT  60
            ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct  29   ATGTCGGAAAAGAAGCAATGTTGTGTTGTGATGAGGATTAACTTGGATTGCAATGCTTGT  88

Query  61   TGTAGAAAAGCAAGGAGGATTATCATCAATATGAAAGAAGTTGACACACACATGATCAAC  120
            ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  89   TGTAGAAAAGCTAGGAGGATTATCATCAATATGAAAGAAGTTGATACACACATGATCAAC  148

Query  121  AAAAAAGAACGTCAAGTAATCCTTTGCGGACGGTTTAGACCATCGGACGTTGCAGTAAAA  180
            ||||| |||||||||||||||||||||||||||||| ||||||| || |||||| |||||
Sbjct  149  AAAAAGGAACGTCAAGTAATCCTTTGCGGACGGTTTCGACCATCCGATGTTGCATTAAAA  208

Query  181  CTGCAAAAGAAGATGAAACGGAGGGTTGAGATTCTCGAAGTTGAAGATCTCGCCAATGGC  240
            ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  209  CTGCAAAGGAAGATGAAACGGAGGGTTGAGATTCTCGAAGTTGAAGATCTCACCAATGGC  268

Query  241  CATGGAGGAGAAGAAGGACAGGAATATGAGC-CAGAGCCACCATATGAACAGCCATATGA  299
            |||||||||||||||||| ||      |||| | |||| ||| |||||||||||| ||||
Sbjct  269  CATGGAGGAGAAGAAGGA-AGC-----GAGCAC-GAGCTACCGTATGAACAGCCACATGA  321

Query  300  ATATTCTCAA-CAATCTGATCACATGACCACACCATTGTTGTGTTAG  345
            ||||||| || ||| ||||||| ||||||||||||||||||||||||
Sbjct  322  ATATTCT-AATCAACCTGATCAGATGACCACACCATTGTTGTGTTAG  367



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16135947429


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5