BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896454
Length=1959
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25970.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2734 0.0
> AT3G25970.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:9500116-9502221 REVERSE LENGTH=2106
Length=2106
Score = 2734 bits (1480), Expect = 0.0
Identities = 1787/1937 (92%), Gaps = 14/1937 (1%)
Strand=Plus/Plus
Query 6 GTTGTTCGATGAAATGCCTCAGAGAGATTCCGTGTCTTGGAACACGATGATTTCTGGATA 65
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||
Sbjct 168 GTTGTTCGATGAAATGCCTAAGAGAGATTCCGTGTCTTGGAACACAATGATTTCTGGGTA 227
Query 66 CACAAGCTGTGGGAAATTGGAGAATTCATGGTGTTTGTTTACA-GATATGAAGAGATGTG 124
|||||||||||||||||||||| || |||||||||| |||||| | ||||||||||| ||
Sbjct 228 CACAAGCTGTGGGAAATTGGAGGATGCATGGTGTTTATTTACATG-TATGAAGAGATCTG 286
Query 125 GATGTTATGTTGATGGGTATAGTTTTAGTAGGTTATTGAAAGGGATTGCTTCTGCGAAAA 184
||| | |||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 287 GATCTGATGTTGATGGGTATAGTTTTAGTAGGTTGTTGAAAGGGATTGCTTCTGTGAAAA 346
Query 185 GGTTCGATCTTGGGGAGCAAGTACATGGTTTGGTTGTAAAGGGAGGTTATGAGTGTAATG 244
||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 347 GGTTCGATCTTGGAGAGCAAGTGCATGGTTTGGTTATAAAGGGAGGTTATGAGTGTAATG 406
Query 245 TGTATGTTGGAAGTTCGCTTGTTGATATGTACGCGAAATGTGAAAGAGTTGAAGATGCTT 304
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 407 TGTATGTTGGAAGTTCGCTTGTTGATATGTATGCGAAATGTGAAAGAGTTGAAGATGCTT 466
Query 305 TTGGGGCTTTTATGGAGATTTTAGAGCCTAACTCTGTTTCATGGAATGCTTTGATTGCTG 364
||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 467 TTGAGGCTTTTAAGGAGATTTCAGAGCCTAACTCTGTTTCATGGAATGCTTTGATTGCTG 526
Query 365 GATTTGTGCAAGTTCGAGATATCGAGACTGCTTTTTGGTTGTTGGGTTTGATGGAGATGA 424
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 527 GATTTGTGCAAGTGCGAGATATCAAGACTGCTTTTTGGTTGTTGGGTTTGATGGAGATGA 586
Query 425 AAGCTGCTGTGACTATGGACGATGGCACTTTTGCTCCACTTCTTACTTTGCTTGATGATC 484
||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||
Sbjct 587 AAGCTGCTGTGACTATGGATGCTGGCACTTTCGCTCCACTTCTTACTTTGCTTGATGATC 646
Query 485 CGATGTTTTGTAACTTGTTGAAGCAAGTTCATGCTAAGGTTTTGAAACTCGGGCTTGAAC 544
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 647 CTATGTTTTGTAACTTGTTAAAGCAAGTTCATGCTAAGGTTTTGAAACTCGGGCTTCAAC 706
Query 545 ATGAGATTACTATATGCAATGCGATGATCAGCTCTTACGCAAATTGTGGTTTAGTATCCG 604
| ||||| ||||||||||||||||||||||||||||| ||| ||||||| | |||||| |
Sbjct 707 ACGAGATCACTATATGCAATGCGATGATCAGCTCTTATGCAGATTGTGGGTCAGTATCAG 766
Query 605 ATGCGAAGAGAGTTTTTGATGGCTTGGGTGGCTCAAAAGACTTGATTTCGTGGAATTCGA 664
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 ATGCAAAGAGAGTTTTTGATGGCTTGGGTGGCTCAAAAGACTTGATTTCGTGGAATTCGA 826
Query 665 TGATCGCAGGTTTATCTAAACACGAGCAAAAGGAATCTGCTTTTGAACTATTTACTGAAA 724
|||| |||||||| |||||||| |||| ||||||||||||||||||||| |||| | |||
Sbjct 827 TGATTGCAGGTTTCTCTAAACATGAGCTAAAGGAATCTGCTTTTGAACTGTTTATTCAAA 886
Query 725 TGCATAGGA-ATTGGATCGAAACTGACATTTATACTTACACCGGCATCGT-AAGTGCTTG 782
|||| || | ||||| ||||||| ||||||||||||||||||||| | || ||| |||||
Sbjct 887 TGCAAAG-ACATTGGGTCGAAACCGACATTTATACTTACACCGGCTT-GTTAAGCGCTTG 944
Query 783 CTCTGGCGAAGAACATCAGAGTTTTGGAAAGTCTTTGCATGGTTTGGTGATAAAGAAGGG 842
|||||||||||||||||| | |||||| ||||||||||||||| |||| |||||||||||
Sbjct 945 CTCTGGCGAAGAACATCAAATTTTTGGGAAGTCTTTGCATGGTATGGTAATAAAGAAGGG 1004
Query 843 ATTGGAGCAAGTTACTTCTGTTTCAAATGCATTGATCTCTATGTATATTCAGTTTCCTAC 902
|||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1005 ATTGGAACAAGTAACTTCTGCAACAAATGCATTGATCTCTATGTATATTCAGTTTCCTAC 1064
Query 903 AGGCGTCATGAAAGATGCTCTGTCTCTATTTGAATCCTTAAAACCTAAGGATCTTGTCTC 962
|||| |||| |||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1065 AGGCACCATGGAAGATGCTCTGTCTCTATTTGAATCCTTAAAATCTAAGGATCTTATCTC 1124
Query 963 TTGGAATTCGATTATGACAGGGTTCTCCCAAAATGGTCTCAGCGAGGATGCAGTAAAGTT 1022
|||||||||||| || ||||||||| |||| || ||||||||||||||||| ||||||||
Sbjct 1125 TTGGAATTCGATCATTACAGGGTTCGCCCAGAAGGGTCTCAGCGAGGATGCGGTAAAGTT 1184
Query 1023 CTTTCGCTACTTAAGATCTTCAAACATAGAAGTCGACGATTACGCCTTCTCTGCAGTTCT 1082
|||| ||||||||||||| ||| | ||| |||||||||||||||||||||||||| ||||
Sbjct 1185 CTTTAGCTACTTAAGATCCTCAGAGATAAAAGTCGACGATTACGCCTTCTCTGCACTTCT 1244
Query 1083 CAGATCATGCTCGGACCTAGCAACACTCCAGTTAGGTCAGCAGACTC-ACGCTCTTGCCA 1141
|||||||||||||||||||||||||||||| ||||||||||||| || |||| || ||||
Sbjct 1245 CAGATCATGCTCGGACCTAGCAACACTCCAATTAGGTCAGCAGA-TCCACGCGCTCGCCA 1303
Query 1142 CTAAATCAAGCTTCGAATCAAACGAGTTTGTAACCAGTTCTCTGATCTTGATGTACTCAA 1201
|||||||| |||||| ||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1304 CTAAATCAGGCTTCGTATCAAACGAGTTTGTAATCAGTTCTCTGATCGTGATGTACTCAA 1363
Query 1202 AATGTGG-AGTAATTGAGAACGCGCGAAAATGCTTCGAGCAGATTTCTTCCAAACACAAT 1260
||||||| | |||| |||| || |||||||||||| | |||||||| ||||||||||
Sbjct 1364 AATGTGGCA-TAATCGAGAGTGCACGAAAATGCTTCCAACAGATTTCCTCCAAACACAGC 1422
Query 1261 ACAATAGCCTGGAACGCGATGATTCTAGGCTACGCTCAACACGGTTCAGGCCAAGTCTCT 1320
||| |||| |||||||| |||||||| || ||||||||||| |||| |||||||||||||
Sbjct 1423 ACAGTAGCTTGGAACGCAATGATTCTTGGATACGCTCAACATGGTTTAGGCCAAGTCTCT 1482
Query 1321 CTTGATCTCTTCTCTCAAATGTGTAACCAAAACGTGAAACTAGACCACGTAACCTTCACT 1380
|||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1483 CTTGATCTCTTCTCCCAAATGTGTAACCAAAACGTGAAGCTAGACCATGTAACCTTCACA 1542
Query 1381 GCAATTCTAACAGCTTGTAGCCACACGGGTTTGATACAAGAGGGGCTTGAGTTACTTAAC 1440
||||| || ||||||||||||||||| ||||| ||||||||||| || ||||| |||||
Sbjct 1543 GCAATCCTTACAGCTTGTAGCCACACCGGTTTAATACAAGAGGGACTCGAGTTGCTTAAT 1602
Query 1441 TCGATGGAACCGGTTTACAAAATCCAACCTCGAATGGAACATTATGCAGCTGCAGTTGAT 1500
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1603 TTAATGGAACCGGTTTACAAAATCCAACCTCGAATGGAACATTACGCAGCTGCAGTTGAT 1662
Query 1501 CTCTTAGGCAGAGCAGGGCTTGTGAACAAAGTGAAAGAGTTAATCGAATCAATGCCATTG 1560
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||
Sbjct 1663 CTCTTAGGCAGAGCAGGGCTCGTGAACAAAGCGAAAGAGTTAATCGAATCAATGCCGTTG 1722
Query 1561 AATCCTGATCCAATGGTGTTGAAAACTTTCCTTGGAGTTTGCAGGGCTTGTGGAGAGATA 1620
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1723 AATCCTGATCCAATGGTATTGAAAACTTTCCTTGGAGTTTGCAGGGCTTGTGGAGAGATC 1782
Query 1621 GAGATGGCTACTCAAGTGGCTAACCATTTGCTAGAGATCGAACCAGAAGATCATTTTGCC 1680
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1783 GAAATGGCTACTCAAGTGGCTAACCATTTGCTAGAGATTGAACCAGAAGATCATTTTACG 1842
Query 1681 TATGTTTCGTTGTCTCATATGTATAGTGATCTaaagaaatgggaagaaaaagcaaatgtg 1740
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||
Sbjct 1843 TATGTTTCGTTGTCTCATATGTATAGTGATCTCAAGAAATGGGAAGAGAAAGCAAGTGTG 1902
Query 1741 aagaagatgatgaaagagagaggtgtaaagaaagTTCCAGGTTGGAGCTGGATTGAGATT 1800
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1903 AAGAAGATGATGAAGGAGAGAGGTGTAAAGAAAGTTCCAGGTTGGAGCTGGATTGAGATT 1962
Query 1801 AGAAATCAAGTTAATGCCTTTAATGCTGAAGACCGATCTCATTCTCTTTCGA-AAGAGAT 1859
|||||||||||||| ||||||||||||||||| ||||| || |||||| | |||| ||
Sbjct 1963 AGAAATCAAGTTAAGGCCTTTAATGCTGAAGATCGATCAAATCCTCTTT-GTCAAGATAT 2021
Query 1860 TTATTTGATGATTGAAGACTTGACTCAGGAAATGCAGTGGCTTGATTCTGATAATGGGTT 1919
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2022 ATATATGATGATTAAAGACTTGACTCAGGAAATGCAGTGGCTTGATTCTGATAATGGGGT 2081
Query 1920 TGAT-CAAGCTTCACTT 1935
|||| || | |||||||
Sbjct 2082 TGATGCA-GATTCACTT 2097
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97037653485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5