BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg896454 Length=1959 Score E Sequences producing significant alignments: (Bits) Value AT3G25970.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2734 0.0 > AT3G25970.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:9500116-9502221 REVERSE LENGTH=2106 Length=2106 Score = 2734 bits (1480), Expect = 0.0 Identities = 1787/1937 (92%), Gaps = 14/1937 (1%) Strand=Plus/Plus Query 6 GTTGTTCGATGAAATGCCTCAGAGAGATTCCGTGTCTTGGAACACGATGATTTCTGGATA 65 ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| || Sbjct 168 GTTGTTCGATGAAATGCCTAAGAGAGATTCCGTGTCTTGGAACACAATGATTTCTGGGTA 227 Query 66 CACAAGCTGTGGGAAATTGGAGAATTCATGGTGTTTGTTTACA-GATATGAAGAGATGTG 124 |||||||||||||||||||||| || |||||||||| |||||| | ||||||||||| || Sbjct 228 CACAAGCTGTGGGAAATTGGAGGATGCATGGTGTTTATTTACATG-TATGAAGAGATCTG 286 Query 125 GATGTTATGTTGATGGGTATAGTTTTAGTAGGTTATTGAAAGGGATTGCTTCTGCGAAAA 184 ||| | |||||||||||||||||||||||||||| ||||||||||||||||||| ||||| Sbjct 287 GATCTGATGTTGATGGGTATAGTTTTAGTAGGTTGTTGAAAGGGATTGCTTCTGTGAAAA 346 Query 185 GGTTCGATCTTGGGGAGCAAGTACATGGTTTGGTTGTAAAGGGAGGTTATGAGTGTAATG 244 ||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||| Sbjct 347 GGTTCGATCTTGGAGAGCAAGTGCATGGTTTGGTTATAAAGGGAGGTTATGAGTGTAATG 406 Query 245 TGTATGTTGGAAGTTCGCTTGTTGATATGTACGCGAAATGTGAAAGAGTTGAAGATGCTT 304 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 407 TGTATGTTGGAAGTTCGCTTGTTGATATGTATGCGAAATGTGAAAGAGTTGAAGATGCTT 466 Query 305 TTGGGGCTTTTATGGAGATTTTAGAGCCTAACTCTGTTTCATGGAATGCTTTGATTGCTG 364 ||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 467 TTGAGGCTTTTAAGGAGATTTCAGAGCCTAACTCTGTTTCATGGAATGCTTTGATTGCTG 526 Query 365 GATTTGTGCAAGTTCGAGATATCGAGACTGCTTTTTGGTTGTTGGGTTTGATGGAGATGA 424 ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 527 GATTTGTGCAAGTGCGAGATATCAAGACTGCTTTTTGGTTGTTGGGTTTGATGGAGATGA 586 Query 425 AAGCTGCTGTGACTATGGACGATGGCACTTTTGCTCCACTTCTTACTTTGCTTGATGATC 484 ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||| Sbjct 587 AAGCTGCTGTGACTATGGATGCTGGCACTTTCGCTCCACTTCTTACTTTGCTTGATGATC 646 Query 485 CGATGTTTTGTAACTTGTTGAAGCAAGTTCATGCTAAGGTTTTGAAACTCGGGCTTGAAC 544 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 647 CTATGTTTTGTAACTTGTTAAAGCAAGTTCATGCTAAGGTTTTGAAACTCGGGCTTCAAC 706 Query 545 ATGAGATTACTATATGCAATGCGATGATCAGCTCTTACGCAAATTGTGGTTTAGTATCCG 604 | ||||| ||||||||||||||||||||||||||||| ||| ||||||| | |||||| | Sbjct 707 ACGAGATCACTATATGCAATGCGATGATCAGCTCTTATGCAGATTGTGGGTCAGTATCAG 766 Query 605 ATGCGAAGAGAGTTTTTGATGGCTTGGGTGGCTCAAAAGACTTGATTTCGTGGAATTCGA 664 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 767 ATGCAAAGAGAGTTTTTGATGGCTTGGGTGGCTCAAAAGACTTGATTTCGTGGAATTCGA 826 Query 665 TGATCGCAGGTTTATCTAAACACGAGCAAAAGGAATCTGCTTTTGAACTATTTACTGAAA 724 |||| |||||||| |||||||| |||| ||||||||||||||||||||| |||| | ||| Sbjct 827 TGATTGCAGGTTTCTCTAAACATGAGCTAAAGGAATCTGCTTTTGAACTGTTTATTCAAA 886 Query 725 TGCATAGGA-ATTGGATCGAAACTGACATTTATACTTACACCGGCATCGT-AAGTGCTTG 782 |||| || | ||||| ||||||| ||||||||||||||||||||| | || ||| ||||| Sbjct 887 TGCAAAG-ACATTGGGTCGAAACCGACATTTATACTTACACCGGCTT-GTTAAGCGCTTG 944 Query 783 CTCTGGCGAAGAACATCAGAGTTTTGGAAAGTCTTTGCATGGTTTGGTGATAAAGAAGGG 842 |||||||||||||||||| | |||||| ||||||||||||||| |||| ||||||||||| Sbjct 945 CTCTGGCGAAGAACATCAAATTTTTGGGAAGTCTTTGCATGGTATGGTAATAAAGAAGGG 1004 Query 843 ATTGGAGCAAGTTACTTCTGTTTCAAATGCATTGATCTCTATGTATATTCAGTTTCCTAC 902 |||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1005 ATTGGAACAAGTAACTTCTGCAACAAATGCATTGATCTCTATGTATATTCAGTTTCCTAC 1064 Query 903 AGGCGTCATGAAAGATGCTCTGTCTCTATTTGAATCCTTAAAACCTAAGGATCTTGTCTC 962 |||| |||| |||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 1065 AGGCACCATGGAAGATGCTCTGTCTCTATTTGAATCCTTAAAATCTAAGGATCTTATCTC 1124 Query 963 TTGGAATTCGATTATGACAGGGTTCTCCCAAAATGGTCTCAGCGAGGATGCAGTAAAGTT 1022 |||||||||||| || ||||||||| |||| || ||||||||||||||||| |||||||| Sbjct 1125 TTGGAATTCGATCATTACAGGGTTCGCCCAGAAGGGTCTCAGCGAGGATGCGGTAAAGTT 1184 Query 1023 CTTTCGCTACTTAAGATCTTCAAACATAGAAGTCGACGATTACGCCTTCTCTGCAGTTCT 1082 |||| ||||||||||||| ||| | ||| |||||||||||||||||||||||||| |||| Sbjct 1185 CTTTAGCTACTTAAGATCCTCAGAGATAAAAGTCGACGATTACGCCTTCTCTGCACTTCT 1244 Query 1083 CAGATCATGCTCGGACCTAGCAACACTCCAGTTAGGTCAGCAGACTC-ACGCTCTTGCCA 1141 |||||||||||||||||||||||||||||| ||||||||||||| || |||| || |||| Sbjct 1245 CAGATCATGCTCGGACCTAGCAACACTCCAATTAGGTCAGCAGA-TCCACGCGCTCGCCA 1303 Query 1142 CTAAATCAAGCTTCGAATCAAACGAGTTTGTAACCAGTTCTCTGATCTTGATGTACTCAA 1201 |||||||| |||||| ||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 1304 CTAAATCAGGCTTCGTATCAAACGAGTTTGTAATCAGTTCTCTGATCGTGATGTACTCAA 1363 Query 1202 AATGTGG-AGTAATTGAGAACGCGCGAAAATGCTTCGAGCAGATTTCTTCCAAACACAAT 1260 ||||||| | |||| |||| || |||||||||||| | |||||||| |||||||||| Sbjct 1364 AATGTGGCA-TAATCGAGAGTGCACGAAAATGCTTCCAACAGATTTCCTCCAAACACAGC 1422 Query 1261 ACAATAGCCTGGAACGCGATGATTCTAGGCTACGCTCAACACGGTTCAGGCCAAGTCTCT 1320 ||| |||| |||||||| |||||||| || ||||||||||| |||| ||||||||||||| Sbjct 1423 ACAGTAGCTTGGAACGCAATGATTCTTGGATACGCTCAACATGGTTTAGGCCAAGTCTCT 1482 Query 1321 CTTGATCTCTTCTCTCAAATGTGTAACCAAAACGTGAAACTAGACCACGTAACCTTCACT 1380 |||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 1483 CTTGATCTCTTCTCCCAAATGTGTAACCAAAACGTGAAGCTAGACCATGTAACCTTCACA 1542 Query 1381 GCAATTCTAACAGCTTGTAGCCACACGGGTTTGATACAAGAGGGGCTTGAGTTACTTAAC 1440 ||||| || ||||||||||||||||| ||||| ||||||||||| || ||||| ||||| Sbjct 1543 GCAATCCTTACAGCTTGTAGCCACACCGGTTTAATACAAGAGGGACTCGAGTTGCTTAAT 1602 Query 1441 TCGATGGAACCGGTTTACAAAATCCAACCTCGAATGGAACATTATGCAGCTGCAGTTGAT 1500 | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1603 TTAATGGAACCGGTTTACAAAATCCAACCTCGAATGGAACATTACGCAGCTGCAGTTGAT 1662 Query 1501 CTCTTAGGCAGAGCAGGGCTTGTGAACAAAGTGAAAGAGTTAATCGAATCAATGCCATTG 1560 |||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||| Sbjct 1663 CTCTTAGGCAGAGCAGGGCTCGTGAACAAAGCGAAAGAGTTAATCGAATCAATGCCGTTG 1722 Query 1561 AATCCTGATCCAATGGTGTTGAAAACTTTCCTTGGAGTTTGCAGGGCTTGTGGAGAGATA 1620 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1723 AATCCTGATCCAATGGTATTGAAAACTTTCCTTGGAGTTTGCAGGGCTTGTGGAGAGATC 1782 Query 1621 GAGATGGCTACTCAAGTGGCTAACCATTTGCTAGAGATCGAACCAGAAGATCATTTTGCC 1680 || ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | Sbjct 1783 GAAATGGCTACTCAAGTGGCTAACCATTTGCTAGAGATTGAACCAGAAGATCATTTTACG 1842 Query 1681 TATGTTTCGTTGTCTCATATGTATAGTGATCTaaagaaatgggaagaaaaagcaaatgtg 1740 |||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||| Sbjct 1843 TATGTTTCGTTGTCTCATATGTATAGTGATCTCAAGAAATGGGAAGAGAAAGCAAGTGTG 1902 Query 1741 aagaagatgatgaaagagagaggtgtaaagaaagTTCCAGGTTGGAGCTGGATTGAGATT 1800 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1903 AAGAAGATGATGAAGGAGAGAGGTGTAAAGAAAGTTCCAGGTTGGAGCTGGATTGAGATT 1962 Query 1801 AGAAATCAAGTTAATGCCTTTAATGCTGAAGACCGATCTCATTCTCTTTCGA-AAGAGAT 1859 |||||||||||||| ||||||||||||||||| ||||| || |||||| | |||| || Sbjct 1963 AGAAATCAAGTTAAGGCCTTTAATGCTGAAGATCGATCAAATCCTCTTT-GTCAAGATAT 2021 Query 1860 TTATTTGATGATTGAAGACTTGACTCAGGAAATGCAGTGGCTTGATTCTGATAATGGGTT 1919 ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2022 ATATATGATGATTAAAGACTTGACTCAGGAAATGCAGTGGCTTGATTCTGATAATGGGGT 2081 Query 1920 TGAT-CAAGCTTCACTT 1935 |||| || | ||||||| Sbjct 2082 TGATGCA-GATTCACTT 2097 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 97037653485 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5