BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg896469

Length=621
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G31450.1 | Symbols:  | Eukaryotic aspartyl protease family p...   433    1e-120


> AT1G31450.1 | Symbols:  | Eukaryotic aspartyl protease family 
protein | chr1:11259872-11261209 REVERSE LENGTH=1338
Length=1338

 Score =  433 bits (234),  Expect = 1e-120
 Identities = 298/329 (91%), Gaps = 4/329 (1%)
 Strand=Plus/Plus

Query  268  GCTAACAGGGAAAACCTAACCGTTGAGCTAATCCACCGTGACTCTAATCATTCTCCACTT  327
            |||||| | || ||| ||||||| |||||||||||||||||||||  |||||||||||| 
Sbjct  70   GCTAACCGAGAGAACTTAACCGTCGAGCTAATCCACCGTGACTCTCCTCATTCTCCACTC  129

Query  328  TACAACCCTCACCACACCGTCTCCGACGGTCTCAACGCTGCTTTCCTCCGCTCAATCTCA  387
            ||||||||||||||||| ||||| ||| |||||||||||||||||||||| |||||||||
Sbjct  130  TACAACCCTCACCACACTGTCTCTGACCGTCTCAACGCTGCTTTCCTCCGATCAATCTCA  189

Query  388  CGCTCTCGCCGTTTCA-ATACCAAAACCGACCTCCAATCCGGGTTGATTTCAAATGGCGG  446
            || ||||||||||||| | ||||||||||| ||||||||||| || || |||||||||||
Sbjct  190  CGTTCTCGCCGTTTCACA-ACCAAAACCGATCTCCAATCCGGTTTAATCTCAAATGGCGG  248

Query  447  CGAATACTTGATGAGTATCTCAATCGGTACTCCTCCGTCGAAAGTCCTT-GCCATCGCTG  505
            ||||||||| |||   ||||||||||||||||| |||||||||||  || ||||| ||||
Sbjct  249  CGAATACTTCATGTCCATCTCAATCGGTACTCCACCGTCGAAAGT-TTTCGCCATTGCTG  307

Query  506  ACACGGGAAGTGACCTAACTTGGGTTCAATGCAAGCCATATCAACAATGTTACAAACAAA  565
            ||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||
Sbjct  308  ACACGGGAAGTGACCTAACTTGGGTCCAATGTAAGCCATGTCAACAATGTTACAAACAAA  367

Query  566  ACAGTCCACTCTTCGACAAGAAGAAATCT  594
            |||||||||||||||||||||||||||||
Sbjct  368  ACAGTCCACTCTTCGACAAGAAGAAATCT  396



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29939551612


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5