BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg896500

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G47630.2 | Symbols:  | CONTAINS InterPro DOMAIN/s: Mitochond...   167    5e-41


> AT3G47630.2 | Symbols:  | CONTAINS InterPro DOMAIN/s: Mitochondrial 
matrix Mmp37 (InterPro:IPR015222); Has 35333 Blast hits 
to 34131 proteins in 2444 species: Archae - 798; Bacteria 
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses 
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:17563046-17565429 
REVERSE LENGTH=1339
Length=1339

 Score =  167 bits (90),  Expect = 5e-41
 Identities = 111/121 (92%), Gaps = 1/121 (1%)
 Strand=Plus/Plus

Query  1    ATGAATTCAGATCACTATGCTTCATGGATCGTTCACCTTGGTGGAGCCATGCTGATTACA  60
            ||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||
Sbjct  307  ATGAATTCAGATCACTATGCTTCATGGATGGTTCACCTTGGTGGAGCTAGGCTGATTACA  366

Query  61   AATGTTGAAGATAGAGTAGGAGTTG-AGTTCACTTCAATCCATTTGTCAATTGAAACGAC  119
            |||||||  |||| ||||||||||| ||||||||||||||| |||||||| || ||||||
Sbjct  367  AATGTTGCCGATAAAGTAGGAGTTGGAGTTCACTTCAATCCGTTTGTCAACTGGAACGAC  426

Query  120  A  120
            |
Sbjct  427  A  427



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10707030537


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5