BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896503
Length=744
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motif... 1042 0.0
AT3G26430.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1042 0.0
> AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain
| chr3:9671517-9676005 FORWARD LENGTH=3033
Length=3033
Score = 1042 bits (564), Expect = 0.0
Identities = 691/750 (92%), Gaps = 18/750 (2%)
Strand=Plus/Plus
Query 1 ATGTCTGAAGACCCGGAGTACCGTTGTTTCATTGGTGGGCTTGCTTGGTCAACGTCTGAT 60
||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 93 ATGTCTGAAGATCCGGAGTACCGTTGCTTCATTGGTGGGCTTGCTTGGACAACGTCTGAT 152
Query 61 CGTGGTCTCAGAGATGCCTTTGAGAAGTACGGTCACCTCGTTGAGGCCAAGGTGGTTCTT 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 153 CGTGGTCTCAGAGATGCCTTTGAGAAGTATGGTCACCTCGTTGAGGCCAAGGTGGTTCTT 212
Query 121 GACAAGTTTTCTGGTCGCTCCCGTGGTTTTGGGTTCATCACTTTTGATGAGAAAAAAGCT 180
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 213 GACAAGTTTTCTGGTCGCTCCCGTGGTTTTGGATTCATCACTTTCGATGAGAAAAAAGCT 272
Query 181 ATGGATGAAGCTATTGCAGCAATGAATGGAATGGATTTAGATGGGCGAACTATCACTGTT 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 273 ATGGATGAAGCTATTGCAGCAATGAATGGAATGGATTTGGATGGGCGAACTATCACTGTT 332
Query 241 GATAAAGCCCAGCCACATCAGGGTGG-GTCAGGCAGAGATCATGATGGAGATCGCAGTCG 299
|||||||| ||||| ||||||||||| | ||||||||||| ||||||| || || ||||
Sbjct 333 GATAAAGCTCAGCCTCATCAGGGTGGTG-CAGGCAGAGATAATGATGGTGACCGTGGTCG 391
Query 300 TGATCGTGGATATGATCGTGATCGTAGCCGTCCCTCTGGTGGGCGCGGTGGTGGAGATTG 359
|| |||||||||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 392 AGACCGTGGATATGATCGTGATCGCAGTCGTCCCTCTGGTGGGCGAGGTGGTGGAGATTG 451
Query 360 CTTTAAATGTGGCAAGCCTGGACATTTTGCAAGGGAGTGTCCTTCTGAAAGTAGTAGAGA 419
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 452 CTTTAAATGTGGCAAGCCTGGACATTTTGCAAGAGAGTGTCCTTCTGAAAGTAGTAGAGA 511
Query 420 TGGTGGCGGAAGGTACAGCTCAAAGGACGATAGGTACAGTGCTAAGGACGATAGGTATGG 479
|||||| ||||||| |||||||||||| |||||||||||| | |||||||||||||||||
Sbjct 512 TGGTGGTGGAAGGTTCAGCTCAAAGGATGATAGGTACAGTTCGAAGGACGATAGGTATGG 571
Query 480 TGCAAAAGAGGATAGGTACGGCTCCAA-GGATGATAGGTACAGCTCCAA-GGATGATAGG 537
||||||||| |||||||| || | ||| ||| |||||||| | | ||| ||||||||||
Sbjct 572 TGCAAAAGATGATAGGTATGG-TGCAAAGGAGGATAGGTATGG-TGCAAAGGATGATAGG 629
Query 538 TACAG-TGCAAAAGATGATAGGTATGG-TGCAAAGGATGATAGGTATGGTAGTAGGGATG 595
||||| | ||| ||||||||||| | | ||| ||||||||||||||||||||||||||
Sbjct 630 TACAGCTCCAAG-GATGATAGGTACAGCTCCAA-GGATGATAGGTATGGTAGTAGGGATG 687
Query 596 GTGGGGGTAGTCGCTATGGACCTGATCGCAGTGGAGAACGCGCTGGAGGACGTAGCCGGG 655
|||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 688 GTGGAGGTAGTCGCTATGGACCTGATCGCAGTGGTGAACGCGCTGGAGGACGCAGCCGGG 747
Query 656 ATGGTGGCAGCCGTGGAGGTCCAGGAGGTGAGAGGCACAGTCGTGCTACTGCTCCATATG 715
|||||||||||||||||| |||||||||||||||||||||||||||| | | |||||
Sbjct 748 ATGGTGGCAGCCGTGGAGCTCCAGGAGGTGAGAGGCACAGTCGTGCT-C--C---ATATG 801
Query 716 ACCGCCCCAGAGCTGGTGGCTTTC-ACTAG 744
||||||||||||||||||| |||| |||||
Sbjct 802 ACCGCCCCAGAGCTGGTGG-TTTCCACTAG 830
Score = 135 bits (73), Expect = 4e-31
Identities = 91/100 (91%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 440 CAAAGGACGATAGGTACAGTGCTAAGGACGATAGGTATGGTGCAAAAGAGGATAGGTACG 499
|||| || |||||||| |||| ||||| ||||||||||||||||| || |||||||||
Sbjct 574 CAAAAGATGATAGGTATGGTGCAAAGGAGGATAGGTATGGTGCAAAGGATGATAGGTACA 633
Query 500 GCTCCAAGGATGATAGGTACAGCTCCAAGGATGATAGGTA 539
||||||||||||||||||||||||||||||||||||||||
Sbjct 634 GCTCCAAGGATGATAGGTACAGCTCCAAGGATGATAGGTA 673
Score = 122 bits (66), Expect = 3e-27
Identities = 87/97 (90%), Gaps = 1/97 (1%)
Strand=Plus/Plus
Query 489 GGATAGGTACGGCTCCAAGGATGATAGGTACAGCTCCAAGGATGATAGGTACAGTGCAAA 548
||| |||| | |||| ||||||||||||||||| || ||||| |||||||| |||||||
Sbjct 519 GGA-AGGTTCAGCTCAAAGGATGATAGGTACAGTTCGAAGGACGATAGGTATGGTGCAAA 577
Query 549 AGATGATAGGTATGGTGCAAAGGATGATAGGTATGGT 585
|||||||||||||||||||||||| ||||||||||||
Sbjct 578 AGATGATAGGTATGGTGCAAAGGAGGATAGGTATGGT 614
Score = 97.1 bits (52), Expect = 2e-19
Identities = 85/101 (84%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 482 CAAAAGAGGATAGGTACGGCTCCAAGGATGATAGGTACAGCT-CCAAGGATGATAGGTAC 540
|||| || ||||||||| | || ||||| |||||||| | | | || |||||||||||
Sbjct 532 CAAAGGATGATAGGTACAGTTCGAAGGACGATAGGTA-TGGTGCAAAAGATGATAGGTAT 590
Query 541 AGTGCAAAAGATGATAGGTATGGTGCAAAGGATGATAGGTA 581
||||||| || |||||||||||||||||||||||||||||
Sbjct 591 GGTGCAAAGGAGGATAGGTATGGTGCAAAGGATGATAGGTA 631
> AT3G26430.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr3:9671517-9675927 FORWARD LENGTH=3162
Length=3162
Score = 1042 bits (564), Expect = 0.0
Identities = 691/750 (92%), Gaps = 18/750 (2%)
Strand=Plus/Plus
Query 1 ATGTCTGAAGACCCGGAGTACCGTTGTTTCATTGGTGGGCTTGCTTGGTCAACGTCTGAT 60
||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 90 ATGTCTGAAGATCCGGAGTACCGTTGCTTCATTGGTGGGCTTGCTTGGACAACGTCTGAT 149
Query 61 CGTGGTCTCAGAGATGCCTTTGAGAAGTACGGTCACCTCGTTGAGGCCAAGGTGGTTCTT 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 150 CGTGGTCTCAGAGATGCCTTTGAGAAGTATGGTCACCTCGTTGAGGCCAAGGTGGTTCTT 209
Query 121 GACAAGTTTTCTGGTCGCTCCCGTGGTTTTGGGTTCATCACTTTTGATGAGAAAAAAGCT 180
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 210 GACAAGTTTTCTGGTCGCTCCCGTGGTTTTGGATTCATCACTTTCGATGAGAAAAAAGCT 269
Query 181 ATGGATGAAGCTATTGCAGCAATGAATGGAATGGATTTAGATGGGCGAACTATCACTGTT 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 270 ATGGATGAAGCTATTGCAGCAATGAATGGAATGGATTTGGATGGGCGAACTATCACTGTT 329
Query 241 GATAAAGCCCAGCCACATCAGGGTGG-GTCAGGCAGAGATCATGATGGAGATCGCAGTCG 299
|||||||| ||||| ||||||||||| | ||||||||||| ||||||| || || ||||
Sbjct 330 GATAAAGCTCAGCCTCATCAGGGTGGTG-CAGGCAGAGATAATGATGGTGACCGTGGTCG 388
Query 300 TGATCGTGGATATGATCGTGATCGTAGCCGTCCCTCTGGTGGGCGCGGTGGTGGAGATTG 359
|| |||||||||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 389 AGACCGTGGATATGATCGTGATCGCAGTCGTCCCTCTGGTGGGCGAGGTGGTGGAGATTG 448
Query 360 CTTTAAATGTGGCAAGCCTGGACATTTTGCAAGGGAGTGTCCTTCTGAAAGTAGTAGAGA 419
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 449 CTTTAAATGTGGCAAGCCTGGACATTTTGCAAGAGAGTGTCCTTCTGAAAGTAGTAGAGA 508
Query 420 TGGTGGCGGAAGGTACAGCTCAAAGGACGATAGGTACAGTGCTAAGGACGATAGGTATGG 479
|||||| ||||||| |||||||||||| |||||||||||| | |||||||||||||||||
Sbjct 509 TGGTGGTGGAAGGTTCAGCTCAAAGGATGATAGGTACAGTTCGAAGGACGATAGGTATGG 568
Query 480 TGCAAAAGAGGATAGGTACGGCTCCAA-GGATGATAGGTACAGCTCCAA-GGATGATAGG 537
||||||||| |||||||| || | ||| ||| |||||||| | | ||| ||||||||||
Sbjct 569 TGCAAAAGATGATAGGTATGG-TGCAAAGGAGGATAGGTATGG-TGCAAAGGATGATAGG 626
Query 538 TACAG-TGCAAAAGATGATAGGTATGG-TGCAAAGGATGATAGGTATGGTAGTAGGGATG 595
||||| | ||| ||||||||||| | | ||| ||||||||||||||||||||||||||
Sbjct 627 TACAGCTCCAAG-GATGATAGGTACAGCTCCAA-GGATGATAGGTATGGTAGTAGGGATG 684
Query 596 GTGGGGGTAGTCGCTATGGACCTGATCGCAGTGGAGAACGCGCTGGAGGACGTAGCCGGG 655
|||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 685 GTGGAGGTAGTCGCTATGGACCTGATCGCAGTGGTGAACGCGCTGGAGGACGCAGCCGGG 744
Query 656 ATGGTGGCAGCCGTGGAGGTCCAGGAGGTGAGAGGCACAGTCGTGCTACTGCTCCATATG 715
|||||||||||||||||| |||||||||||||||||||||||||||| | | |||||
Sbjct 745 ATGGTGGCAGCCGTGGAGCTCCAGGAGGTGAGAGGCACAGTCGTGCT-C--C---ATATG 798
Query 716 ACCGCCCCAGAGCTGGTGGCTTTC-ACTAG 744
||||||||||||||||||| |||| |||||
Sbjct 799 ACCGCCCCAGAGCTGGTGG-TTTCCACTAG 827
Score = 135 bits (73), Expect = 4e-31
Identities = 91/100 (91%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 440 CAAAGGACGATAGGTACAGTGCTAAGGACGATAGGTATGGTGCAAAAGAGGATAGGTACG 499
|||| || |||||||| |||| ||||| ||||||||||||||||| || |||||||||
Sbjct 571 CAAAAGATGATAGGTATGGTGCAAAGGAGGATAGGTATGGTGCAAAGGATGATAGGTACA 630
Query 500 GCTCCAAGGATGATAGGTACAGCTCCAAGGATGATAGGTA 539
||||||||||||||||||||||||||||||||||||||||
Sbjct 631 GCTCCAAGGATGATAGGTACAGCTCCAAGGATGATAGGTA 670
Score = 122 bits (66), Expect = 3e-27
Identities = 87/97 (90%), Gaps = 1/97 (1%)
Strand=Plus/Plus
Query 489 GGATAGGTACGGCTCCAAGGATGATAGGTACAGCTCCAAGGATGATAGGTACAGTGCAAA 548
||| |||| | |||| ||||||||||||||||| || ||||| |||||||| |||||||
Sbjct 516 GGA-AGGTTCAGCTCAAAGGATGATAGGTACAGTTCGAAGGACGATAGGTATGGTGCAAA 574
Query 549 AGATGATAGGTATGGTGCAAAGGATGATAGGTATGGT 585
|||||||||||||||||||||||| ||||||||||||
Sbjct 575 AGATGATAGGTATGGTGCAAAGGAGGATAGGTATGGT 611
Score = 97.1 bits (52), Expect = 2e-19
Identities = 85/101 (84%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 482 CAAAAGAGGATAGGTACGGCTCCAAGGATGATAGGTACAGCT-CCAAGGATGATAGGTAC 540
|||| || ||||||||| | || ||||| |||||||| | | | || |||||||||||
Sbjct 529 CAAAGGATGATAGGTACAGTTCGAAGGACGATAGGTA-TGGTGCAAAAGATGATAGGTAT 587
Query 541 AGTGCAAAAGATGATAGGTATGGTGCAAAGGATGATAGGTA 581
||||||| || |||||||||||||||||||||||||||||
Sbjct 588 GGTGCAAAGGAGGATAGGTATGGTGCAAAGGATGATAGGTA 628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36118351693
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5