BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg896516

Length=207
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G08670.1 | Symbols:  | ATP synthase alpha/beta family protei...   158    2e-38
  AT5G08690.1 | Symbols:  | ATP synthase alpha/beta family protei...   147    5e-35


> AT5G08670.1 | Symbols:  | ATP synthase alpha/beta family protein 
| chr5:2818117-2821176 REVERSE LENGTH=1976
Length=1976

 Score =  158 bits (85),  Expect = 2e-38
 Identities = 102/110 (93%), Gaps = 2/110 (2%)
 Strand=Plus/Plus

Query  57   TCACGGTGGTTTCTCTGTGTTTGCTGGCGTGGCAGAACGGACCCGTGAAGGCAATGACTT  116
            ||| ||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||
Sbjct  780  TCATGGTGGTTTCTCTGTGTTTGCTGGTGTGGGAGAACGAACCCGTGAAGGCAATGACTT  839

Query  117  GTACAGAGAAATGATTGAGAGCAGTGTCATCAAGCTAGGCGAGAAA-CAG  165
            |||||||||||||||||||||  ||||||||||||||||||| ||| |||
Sbjct  840  GTACAGAGAAATGATTGAGAGTGGTGTCATCAAGCTAGGCGA-AAAGCAG  888


> AT5G08690.1 | Symbols:  | ATP synthase alpha/beta family protein 
| chr5:2825713-2828662 FORWARD LENGTH=2007
Length=2007

 Score =  147 bits (79),  Expect = 5e-35
 Identities = 99/109 (91%), Gaps = 0/109 (0%)
 Strand=Plus/Plus

Query  57   TCACGGTGGTTTCTCTGTGTTTGCTGGCGTGGCAGAACGGACCCGTGAAGGCAATGACTT  116
            ||| ||||| ||||||||||||||||| ||||  ||||| |||||||| |||||||||||
Sbjct  779  TCATGGTGGGTTCTCTGTGTTTGCTGGTGTGGGGGAACGAACCCGTGAGGGCAATGACTT  838

Query  117  GTACAGAGAAATGATTGAGAGCAGTGTCATCAAGCTAGGCGAGAAACAG  165
            |||||||||||||||||||||  |||||||||||||||||||||| |||
Sbjct  839  GTACAGAGAAATGATTGAGAGTGGTGTCATCAAGCTAGGCGAGAAGCAG  887



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9255448584


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5