BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896560
Length=267
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26820.1 | Symbols: | Esterase/lipase/thioesterase family p... 252 1e-66
AT3G26840.1 | Symbols: | Esterase/lipase/thioesterase family p... 252 1e-66
> AT3G26820.1 | Symbols: | Esterase/lipase/thioesterase family
protein | chr3:9881128-9885067 FORWARD LENGTH=1905
Length=1905
Score = 252 bits (136), Expect = 1e-66
Identities = 176/195 (90%), Gaps = 4/195 (2%)
Strand=Plus/Plus
Query 75 AGGTAAGAAGAAAGAGCTCAAAGACAAAGATAAGGCACAAAAGCTTTACTTGCAAGTC-A 133
||||||| |||| ||||| ||||||||||| ||||||||| || |||||||||||| | |
Sbjct 1713 AGGTAAGGAGAAGGAGCTGAAAGACAAAGAAAAGGCACAAGAGGTTTACTTGCAAG-CAA 1771
Query 134 AGTCTGAGGTCGAAGAATGCATCGCCTATTTAAAAGTGAAAAGAGAGAGTGATCCTTACA 193
|||||||||||||| ||||||| || || |||||| ||||||||||| ||||||||||||
Sbjct 1772 AGTCTGAGGTCGAACAATGCATTGCATACTTAAAAATGAAAAGAGAGTGTGATCCTTACA 1831
Query 194 GA-AACTTGTTGCCAAGGATGATGTATCAAGCCTCGCATGGTTGGTCTTCTGAAATTCCA 252
|| || ||||||||||||||||||||||||||||| ||||||||||||| |||||| |||
Sbjct 1832 GACAA-TTGTTGCCAAGGATGATGTATCAAGCCTCACATGGTTGGTCTTGTGAAATCCCA 1890
Query 253 ACGTTTGATCTCTAA 267
|||||||||||||||
Sbjct 1891 ACGTTTGATCTCTAA 1905
> AT3G26840.1 | Symbols: | Esterase/lipase/thioesterase family
protein | chr3:9892794-9896337 FORWARD LENGTH=2303
Length=2303
Score = 252 bits (136), Expect = 1e-66
Identities = 174/193 (90%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 75 AGGTAAGAAGAAAGAGCTCAAAGACAAAGATAAGGCACAAAAGCTTTACTTGCAAGTCAA 134
||||||| ||||||| || ||||||||||| ||||||||| |||| ||||||||||| ||
Sbjct 1928 AGGTAAGGAGAAAGAACTAAAAGACAAAGAGAAGGCACAAGAGCTCTACTTGCAAGTTAA 1987
Query 135 GTCTGAGGTCGAAGAATGCATCGCCTATTTAAAAGTGAAAAGAGAGAGTGATCCTTACAG 194
|||||||| ||| ||||||| | |||||||||||||||||||||||||||||| |||||
Sbjct 1988 ATCTGAGGTAGAACAATGCATTGACTATTTAAAAGTGAAAAGAGAGAGTGATCCCTACAG 2047
Query 195 AAACTTGTTGCCAAGGATGATGTATCAAGCCTCGCATGGTTGGTCTTCTGAAATTCCAAC 254
| |||| ||||| |||||| ||||||| ||||| ||||||||||||||||||||||||||
Sbjct 2048 ACACTTATTGCCTAGGATGTTGTATCAGGCCTCACATGGTTGGTCTTCTGAAATTCCAAC 2107
Query 255 GTTTGATCTCTAA 267
|||||||||||||
Sbjct 2108 GTTTGATCTCTAA 2120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12215063007
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5