BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896580
Length=525
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26960.1 | Symbols: | Pollen Ole e 1 allergen and extensin ... 791 0.0
> AT3G26960.1 | Symbols: | Pollen Ole e 1 allergen and extensin
family protein | chr3:9944668-9945579 REVERSE LENGTH=836
Length=836
Score = 791 bits (428), Expect = 0.0
Identities = 494/526 (94%), Gaps = 4/526 (1%)
Strand=Plus/Plus
Query 1 ATGAAGAAAAAATCAATGATAATGttt-ttgttttttCTTCTGCAATTTCTGTTTGTAAA 59
|||| ||| |||||| ||| ||||||| || ||| | ||||||||||||||| | |||||
Sbjct 121 ATGACGAAGAAATCACTGACAATGTTTCTT-TTTATACTTCTGCAATTTCTGCTCGTAAA 179
Query 60 CTCTCTATCTCCAAAACATTCATCACCAAAACCAAAACCAGATGCAGAAATCACTATAAT 119
|||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 180 CTCTCTATCTTCAAAGCATTCATCACCCAAACCAAAACCAGATGCAGAAATCACTATAAT 239
Query 120 GGGTTTTGTTTACTGCGATGTCTGTTCCAACAACAGTTTTTCTAAACACAGTTACTTCAT 179
||||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||
Sbjct 240 GGGTTTTGTTTACTGCGATGTTTGCTCCAAAAACAGTTTCTCTAAACACAGTTACTTCAT 299
Query 180 GTCCGGTGTGGAAGTGAGAATAGTCTGCAGATTCAAAGCAGCTTCGTCAACAACGAGAGA 239
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||
Sbjct 300 GTCCGGTGTGGAAGTGAGGATAGTCTGCCGATTCAAAGCAGCTTCGTCAACAACGACAGA 359
Query 240 GACTATAACATTCTCTGCTAACAGAACCACCAACGAGTTTGGACTCTACAAGGTAGCCAT 299
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 GACTATAACATTCTCTGCAAACAGAACCACCAACGAGTTTGGACTGTACAAGGTAGCCAT 419
Query 300 ATCTTCTCTAGATTGTGCTGATGTAGACAGCCTCGCGAGTTCTTGTCAAGCGAGTTTGAT 359
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 420 ATCTTCTCTAGATTGTGCTGATGTGGACAGTCTCGCGAGTTCTTGTCAAGCGAGTTTGAT 479
Query 360 CGGAAGAAGAAACTTCTCGGCTTCTTCTTGCAACATTCCTGGTTATAGAACCACAACGGA 419
||||||| ||||||||| | ||||||||||||||||||||||||||||||||| |||||
Sbjct 480 TGGAAGAAAAAACTTCTCCGATTCTTCTTGCAACATTCCTGGTTATAGAACCACTACGGA 539
Query 420 TCAGGTCTTATTTAAGTCTCAA-AGGTCTAATTCCTGTGTTTATGGATTCAATGCTTTGA 478
||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 540 TCAGGTCTTGTTTAAGTCTCAACA-GTCTAATTCCTGTGTTTATGGATTCAATGCTTTGA 598
Query 479 ATTTCAGACCGTTCAAGAGGGATCTTGCCTTGTGTGGCAAGAAATA 524
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ATTTCAGACCGTTCAAGAGGGATCTTGCCTTGTGTGGCAAGAAATA 644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25117073500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5