BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg896603 Length=348 Score E Sequences producing significant alignments: (Bits) Value AT2G16520.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 137 5e-32 > AT2G16520.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G45560.1); Has 72 Blast hits to 69 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:7161922-7162580 REVERSE LENGTH=496 Length=496 Score = 137 bits (74), Expect = 5e-32 Identities = 140/171 (82%), Gaps = 7/171 (4%) Strand=Plus/Plus Query 11 GGAGATGTGCGCCTGAGCAAGAGAACACTGCGTTGCTAATGGATGATGTGCAACGCATAA 70 |||||| | |||||| |||| | || ||| || ||||| |||||||||||||||||| Sbjct 294 GGAGATCAGTGCCTGATAAAGATAGCATTGCAATGATAATGTATGATGTGCAACGCATAA 353 Query 71 GACAACAATTGACATCTAGCATC-CCTGTTCTGATGACTGAAAATCAAGCTAACT---TT 126 |||||||||||||||| |||| | ||| ||||| |||||| ||||||| |||| | || Sbjct 354 GACAACAATTGACATCAAGCA-CACCTCTTCTGGTGACTGGAAATCAAACTAA-TAAGTT 411 Query 127 -GCTTATAAACTTGCATTGGAAACACTGGTTTCTGAAACCAGCATATGTAT 176 |||||| |||||||| | |||||||| ||||| |||| ||||||| |||| Sbjct 412 AGCTTATGAACTTGCACTAGAAACACTAGTTTCAGAAATCAGCATAAGTAT 462 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16286750676 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5