BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg896604 Length=525 Score E Sequences producing significant alignments: (Bits) Value AT2G16520.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 130 1e-29 > AT2G16520.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G45560.1); Has 72 Blast hits to 69 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:7161922-7162580 REVERSE LENGTH=496 Length=496 Score = 130 bits (70), Expect = 1e-29 Identities = 110/128 (86%), Gaps = 7/128 (5%) Strand=Plus/Plus Query 1 ATGGATGATGTGCAACGCATAAGACAACAATTGACATCTAGCATC-CCTGTTCTGATGAC 59 ||| |||||||||||||||||||||||||||||||||| |||| | ||| ||||| |||| Sbjct 332 ATGTATGATGTGCAACGCATAAGACAACAATTGACATCAAGCA-CACCTCTTCTGGTGAC 390 Query 60 TGAAAATCAAGCTAACT---TT-GCTTATAAACTTGCATTGGAAACACTAGTTTCTCAAA 115 || ||||||| |||| | || |||||| |||||||| | |||||||||||||| ||| Sbjct 391 TGGAAATCAAACTAA-TAAGTTAGCTTATGAACTTGCACTAGAAACACTAGTTTCAGAAA 449 Query 116 TCAGCATA 123 |||||||| Sbjct 450 TCAGCATA 457 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25117073500 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5