BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg896604

Length=525
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G16520.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   130    1e-29


> AT2G16520.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
endomembrane system; BEST Arabidopsis thaliana protein match 
is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G45560.1); 
Has 72 Blast hits to 69 proteins in 3 species: 
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants 
- 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 
| chr2:7161922-7162580 REVERSE LENGTH=496
Length=496

 Score =  130 bits (70),  Expect = 1e-29
 Identities = 110/128 (86%), Gaps = 7/128 (5%)
 Strand=Plus/Plus

Query  1    ATGGATGATGTGCAACGCATAAGACAACAATTGACATCTAGCATC-CCTGTTCTGATGAC  59
            ||| |||||||||||||||||||||||||||||||||| |||| | ||| ||||| ||||
Sbjct  332  ATGTATGATGTGCAACGCATAAGACAACAATTGACATCAAGCA-CACCTCTTCTGGTGAC  390

Query  60   TGAAAATCAAGCTAACT---TT-GCTTATAAACTTGCATTGGAAACACTAGTTTCTCAAA  115
            || ||||||| |||| |   || |||||| |||||||| | ||||||||||||||  |||
Sbjct  391  TGGAAATCAAACTAA-TAAGTTAGCTTATGAACTTGCACTAGAAACACTAGTTTCAGAAA  449

Query  116  TCAGCATA  123
            ||||||||
Sbjct  450  TCAGCATA  457



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25117073500


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5