BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896627
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19540.1 | Symbols: | NmrA-like negative transcriptional re... 625 3e-178
> AT1G19540.1 | Symbols: | NmrA-like negative transcriptional
regulator family protein | chr1:6765667-6767341 FORWARD LENGTH=1073
Length=1073
Score = 625 bits (338), Expect = 3e-178
Identities = 498/573 (87%), Gaps = 19/573 (3%)
Strand=Plus/Plus
Query 1 ATGACGAGCAAGATTCTGGTCATCGGAGCGACAGGTAACATCGGAAAAGTCATCGTCCAG 60
||||||||||||||||| || |||||||| |||||| ||||||||||||| |||| ||
Sbjct 47 ATGACGAGCAAGATTCTAGTTATCGGAGCTACAGGTCTCATCGGAAAAGTCCTCGTAGAG 106
Query 61 GGAAGCGCCAAGTCCGGTCACGCCACTTTCGCTCTAGTTAGAGAGGCCTCTCTCTCTGAT 120
| |||||||||||| || ||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 107 GAAAGCGCCAAGTCTGGCCACGCCACTTTCGCTCTGGTTAGAGAAGCCTCTCTCTCCGAT 166
Query 121 CCGGTTAAGGCCAAACTCGTCGAGAGCTTCAAAGATCTCGGCGTTACCATACTATATGGA 180
|| ||||||||| ||||||| ||||| |||||||||||||||||||||||||| || |||
Sbjct 167 CCCGTTAAGGCCCAACTCGTTGAGAGATTCAAAGATCTCGGCGTTACCATACTCTACGGA 226
Query 181 AGTTTAACTGATAAAGAGAGCTTAGTGAATGCAATTAAACAAGTCGATGTCGTGATATCA 240
||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 227 AGTTTAAGTGATAAAGAGAGCTTAGTGAAGGCGATTAAACAAGTCGATGTCGTGATATCA 286
Query 241 GCTGTTGGTCGGGCTCAAA-T----T-CTCGATCAAATCAATATCATTGATGCTATCAAA 294
|||||||||||| ||||| | | || |||||| ||||||||| ||||| ||||||
Sbjct 287 GCTGTTGGTCGGTTTCAAACTGAAATTCTTAATCAAACCAATATCATCGATGCCATCAAA 346
Query 295 GAATCTGGAAATGTTAAGAGATTCTTACCATCGGAATTTGACAACGACGTGGATCGTACT 354
||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||
Sbjct 347 GAATCTGGAAATGTTAAGAGATTCTTACCGTCGGAATTTGGTAATGACGTGGATCGTACG 406
Query 355 GTGGCCATCGAGCCAGCGACTGCGACGCTATCAAA-TTACAACAGGAAAGCTCAGATAAG 413
|| ||||| |||||| || || ||||| | || || || ||||||||||||||
Sbjct 407 GTAGCCATTGAGCCA---AC-GC-----TATCAGAGTT-CATCACTAAAGCTCAGATAAG 456
Query 414 GCGTGCCATAGAAGCCGCAAAGATACCTTATACGTATGTGGTCACAGGTTGTTTTGCTGG 473
||||||||| ||||| ||||||||||||||||||||||| ||| ||||||| ||||| ||
Sbjct 457 GCGTGCCATTGAAGCTGCAAAGATACCTTATACGTATGTCGTCTCAGGTTGCTTTGCAGG 516
Query 474 T-TTTTTCGTTCCGTGTCTAGGTCAATGCCACTTGCGACTCACATCTCCTCCTAGAGATA 532
| ||||| ||||| ||| | |||||||||||||||||||||| ||||||||||||||| |
Sbjct 517 TCTTTTT-GTTCCTTGTTTGGGTCAATGCCACTTGCGACTCAGATCTCCTCCTAGAGACA 575
Query 533 AAGTTTCTATCTACGACAGTGGCAATGGCAAAG 565
||||||| ||||| || | ||||||||||||||
Sbjct 576 AAGTTTCAATCTATGATACTGGCAATGGCAAAG 608
Score = 418 bits (226), Expect = 5e-116
Identities = 327/376 (87%), Gaps = 6/376 (2%)
Strand=Plus/Plus
Query 642 AGCCATTTTCAATATTGAAGAAGACATTGCTACATATACATTAAAAGCTGTTGATGACCC 701
||||||| |||| | |||||||||||| | | |||||||||| |||||||||||||| ||
Sbjct 607 AGCCATTGTCAACACTGAAGAAGACATCGTTGCATATACATTGAAAGCTGTTGATGATCC 666
Query 702 GAGAACAGTTAACAAGATTCTCTACATTTACCCGCCCAAGAACATTGTATCGCAGAACGA 761
||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 667 GAGAACACTTAACAAGATTCTCTACATTCACCCGCCCAATTACATTGTATCGCAGAACGA 726
Query 762 TATGGTCGGTTTTTGGGA-GAGAAAGATCGGTAAGACTCTCGACAAGACTTATGTTTCAG 820
|||||| ||||| ||||| || ||||||||||||||||||||| ||||||||||||||||
Sbjct 727 TATGGTTGGTTTGTGGGAGGA-AAAGATCGGTAAGACTCTCGAAAAGACTTATGTTTCAG 785
Query 821 AGGAAGAGCTCCTCAAAAGCATCCAAGAGACTCTGCCACCAATTGATTTTGCCATGGGTT 880
||||||| |||||||||| ||||||||||| | ||| ||||| |||||| |||||
Sbjct 786 AGGAAGAACTCCTCAAAACCATCCAAGAGAGTAAGCCTCCAATGGATTTTTTGGTGGGTC 845
Query 881 TGATCCATACGATATTTGTGAAGAGCGATC-ATACCTCCTTCGA-TATAGACCCTTCTTT 938
|||||||||| || |||||||||| || | |||||||||| | |||||| ||||||||
Sbjct 846 TGATCCATACAATCCTTGTGAAGAGTGA-CTTTACCTCCTTC-ACTATAGATCCTTCTTT 903
Query 939 TGGAGTTGAGGCTTCCGAGCTTTACCCCGAGGTGAAGTACACAACCATCGATGAGTATCT 998
||||||||||||||||||||||||||| || || |||||||| | | ||||||| |||
Sbjct 904 TGGAGTTGAGGCTTCCGAGCTTTACCCTGAAGTCAAGTACACTAGTGTTGATGAGTTTCT 963
Query 999 TAACCGGTTTGTCTGA 1014
|||||||||| |||||
Sbjct 964 TAACCGGTTTATCTGA 979
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49681571383
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5