BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg896650

Length=1794
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G10130.1 | Symbols: ECA3, ATECA3 | endoplasmic reticulum-typ...   115    1e-24


> AT1G10130.1 | Symbols: ECA3, ATECA3 | endoplasmic reticulum-type 
calcium-transporting ATPase 3 | chr1:3310930-3322213 FORWARD 
LENGTH=3478
Length=3478

 Score =  115 bits (62),  Expect = 1e-24
 Identities = 80/89 (90%), Gaps = 0/89 (0%)
 Strand=Plus/Plus

Query  1451  ATTCAATGTCTTGTGCTCTGAACATGTTGAGCAAGCATGAACGTGCATCATACTGCAACA  1510
             |||||||| ||| |||||| |||||||||||||||||||||||||||||||| |||||| 
Sbjct  1573  ATTCAATGCCTTCTGCTCTAAACATGTTGAGCAAGCATGAACGTGCATCATATTGCAACC  1632

Query  1511  ACTGTCGGGAAAACCAATTGAAAAAGGTT  1539
             | | | ||||||||||||| |||||||||
Sbjct  1633  ATTATTGGGAAAACCAATTCAAAAAGGTT  1661



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 88754563560


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5