BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896655
Length=1395
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27440.1 | Symbols: UKL5 | uridine kinase-like 5 | chr3:1015... 2154 0.0
AT5G40870.1 | Symbols: ATUK/UPRT1, UKL1, UK/UPRT1 | uridine kin... 340 2e-92
> AT3G27440.1 | Symbols: UKL5 | uridine kinase-like 5 | chr3:10155555-10157931
FORWARD LENGTH=1398
Length=1398
Score = 2154 bits (1166), Expect = 0.0
Identities = 1316/1391 (95%), Gaps = 0/1391 (0%)
Strand=Plus/Plus
Query 1 ATGGAGCAATTATCTAATGGCGTTAGAGATCACTGTTTGATCAGTGACTATATTTCTCCT 60
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGGAGAAATTATCTAATGGCGTTAGAGATCACTGTTTGATCAGTGACTATGTTTCTCCT 60
Query 61 TCAGCTCCTGCTCCTCTTAAACAGCCTTTCGTGATCGGTGTTGCCGGAGGAACCGCCTCC 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 TCAGCTCCTGCTCCTCTTAAACAACCTTTCGTGATCGGTGTTGCCGGAGGAACCGCCTCC 120
Query 121 GGGAAGACGACGGTTTGCAATATGATCATGTCTCAGTTACACGATCAACGTGTTGTCCTT 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 GGGAAGACGACGGTTTGCAATATGATCATGTCTCAGTTACATGATCAACGTGTTGTCCTT 180
Query 181 GTGAACCAAGATTCGTTTTATCATTCGCTTAGTGAGGAGAAACTGAAGAAGGTTCATGAA 240
|| ||||||||||||||||| || ||||||| | |||||||| |||| ||||||||||||
Sbjct 181 GTTAACCAAGATTCGTTTTACCACTCGCTTACTAAGGAGAAATTGAACAAGGTTCATGAA 240
Query 241 TATAATTTCGATCATCCTGACGCATTCAACACCGAGGTGTTGCTTTCGTGTATGGAGAAA 300
||||| |||||||||||||| ||||||||||| ||||| || ||||| |||||||||||
Sbjct 241 TATAACTTCGATCATCCTGATGCATTCAACACTGAGGTTTTACTTTCATGTATGGAGAAG 300
Query 301 CTACGATCTGGACAACCAGTGAACATTCCGAGTTATGATTTCAAAATCCACCAGAGCATT 360
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 301 TTACGATCTGGACAACCAGTGAACATTCCGAGTTACGATTTCAAAATCCATCAGAGCATT 360
Query 361 GAATCATCAAGTCCGGTTAATCCTGGTGATGTAATCATCTTAGAGGGAATCCTAGTTCTT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAATCATCAAGTCCGGTTAATCCTGGTGATGTAATCATCTTAGAGGGAATCCTAGTTCTT 420
Query 421 CATGATCCTCGAGTTCGTGATCTCATGAACATGAAGATCTTTGTTGATACAGATGCTGAT 480
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 AATGATCCTCGAGTTCGTGATCTCATGAACATGAAGATCTTTGTCGATACAGATGCTGAT 480
Query 481 GTACGGCTTTCGAGAAGAATACAACGTGATACCGTCGAGAGAGGAAGAAACATCCAAAAT 540
||||| || |||||||||||||| ||||| ||||||||||||||||||||||| || |||
Sbjct 481 GTACGACTCTCGAGAAGAATACAGCGTGACACCGTCGAGAGAGGAAGAAACATACAGAAT 540
Query 541 GTGCTTGAACAGTATACAAAGTTTGTGAAGCCTAGTTTTGATGAATTCATCCAGCCATCG 600
||||||||||||||||| |||||||||||||| || || ||||||| ||| ||||| |||
Sbjct 541 GTGCTTGAACAGTATACTAAGTTTGTGAAGCCGAGCTTCGATGAATACATTCAGCCGTCG 600
Query 601 ATGAAGTACGCTGACATAATCATTCCTCGAGGAGGAGACAATGATGTTGCAATTGACCTT 660
|||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 601 ATGAAGTATGCTGATATAATCATTCCACGAGGAGGAGATAATGATGTTGCAATTGATCTC 660
Query 661 ATTGTTCAACATATCCGTACAAAGCTGTGCCAACACAATCTCTGTAAGATATACTCAAAC 720
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATTGTACAACATATTCGTACAAAGCTGTGCCAACACAATCTCTGTAAGATATACTCAAAC 720
Query 721 ATCTTCATCATATCTTCAACATTCCAGATCAAAGGAATGCATACTCTTATCCGCGACATC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 721 ATCTTCATCATATCTTCAACATTCCAGATCAAAGGAATGCATACTCTTATCCGTGATATC 780
Query 781 AACACAACAAAGCATGATTTCGTCTTTTACGCTGACCGATTGATTCGACTGGTCGTGGAA 840
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 781 AACACAACCAAGCATGATTTCGTCTTCTACGCTGACCGATTGATTCGACTGGTCGTGGAA 840
Query 841 CATGGACTTGGTCATCTTCCTTTCACAGAGAAACAGATCACCACTCCAACAGGGTCAGTG 900
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 841 CATGGACTTGGTCATCTTCCTTTCACAGAGAAACAGATCACAACTCCAACAGGGTCAGTG 900
Query 901 TACACTGGAGTCGACTTCTGCAAGAGATTGTGTGGCGTCTCAGTGATCAGAAGTGGAGAA 960
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 901 TACACTGGAGTCGACTTCTGCAAGAGATTGTGCGGTGTCTCAGTGATCAGAAGTGGAGAA 960
Query 961 AGCATGGAGAATGCACTAAGAGCTTGCTGCAATGGAATTAAGATTGGTAAAATTCTCATT 1020
|||||||| || || |||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 961 AGCATGGAAAACGCTCTAAGAGCTTGCTGCAATGGGATTAAGATTGGTAAAATCCTCATT 1020
Query 1021 CACAGAGAAAATAACGATGGTCGTCAGTTAATATATGAGAAGTTGCCGAAAGATATCTCA 1080
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1021 CACAGAGAGAATAACGATGGTCGTCAGTTAATATATGAGAAGTTGCCAAAAGATATCTCA 1080
Query 1081 AGCAGACATGTCTTCCTCCTTGACCCTGTTCTAGCTTCAGGATACTCGGCAGTGAAAGCT 1140
||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||
Sbjct 1081 AGCAGACATGTCTTCCTCCTTGACCCTGTTCTAGCATCAGGCTACTCTGCAGTTAAAGCT 1140
Query 1141 ATAACTTTGCTTCTGAGCAAGGGTGTTCCAGAATCACATATCATCTTTCTCAATCTTATA 1200
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1141 ATAACTTTGCTTCTAAGCAAGGGAGTTCCAGAATCACATATCATCTTTCTCAATCTTATA 1200
Query 1201 GCAGCACCTCAAGGTATCCATGCACTCTGCAAGAAATTCCCAATGCTAAAGATTGTGACT 1260
|||||||||||||| ||||| || || |||||||||||||| |||||||||||||||||
Sbjct 1201 GCAGCACCTCAAGGCATCCACGCGCTTTGCAAGAAATTCCCGATGCTAAAGATTGTGACA 1260
Query 1261 TCGGAAATCGATGCATCCCTCAATGAGGACTCACGTGTGATTCCAGGCATGGGAGAATTT 1320
|||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1261 TCGGAAATCGATTCATCTCTCAATGAGGACTCACGTGTGATTCCAGGCTTGGGAGAATTT 1320
Query 1321 GCAGACCGTTACTTTGGTACAAACAACATTAATTCAAAAGTATCAAGCTTGTCTGCAAAT 1380
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1321 GCAGACCGTTACTTTGGGACAAACAACATTAATTCAAAAGTATCAAGCTTGTCTACAAAT 1380
Query 1381 CTCAAGTTAAG 1391
|||||||||||
Sbjct 1381 CTCAAGTTAAG 1391
> AT5G40870.1 | Symbols: ATUK/UPRT1, UKL1, UK/UPRT1 | uridine kinase/uracil
phosphoribosyltransferase 1 | chr5:16374908-16378652
FORWARD LENGTH=1842
Length=1842
Score = 340 bits (184), Expect = 2e-92
Identities = 504/655 (77%), Gaps = 36/655 (5%)
Strand=Plus/Plus
Query 387 TGATGTAATCATCTTAG-AGGGAATCCTAGTTCTT-CATGATC-CTCGAGTTCGTG-ATC 442
||||||||| || || | |||| || |||||| || ||||| | | |||||||| | |||
Sbjct 602 TGATGTAATAATATTGGAAGGG-ATTCTAGTT-TTCCATGA-CTCACGAGTTCG-GAATC 657
Query 443 TCATGAACATGAAGATCTTTGTTGATACAGATGCTGATGTACGGCTTTCGAGAAGAAT-A 501
| ||||| ||||||||||||||||||||||||||||||||| ||||| | | ||||| |
Sbjct 658 TGATGAATATGAAGATCTTTGTTGATACAGATGCTGATGTAAGGCTTGCTCGCAGAATTA 717
Query 502 CAACGTGATACCGTCGAGAGAGGAAGAAACATCCAAAA-TGTGCTTGAACAGTATACAAA 560
||||| || || ||||| || || | || || |||||||||||||||| ||||
Sbjct 718 GG-CGTGACACAGTTGAGAGGGGTAGGGATGTC-AATTCTGTGCTTGAACAGTATGCAAA 775
Query 561 GTTTGTGAAGCCTAGT-TTTGATGAATTCATCCAGCCATCGATGAAGTACGCTGACATAA 619
|||||||||||| | |||||||| ||| | | || || | ||| || |||||| | |
Sbjct 776 GTTTGTGAAGCCG-GCATTTGATGACTTCGTGCTCCCTTCAAAGAAATATGCTGACGTGA 834
Query 620 TCATTCCTCGAGGAGGAGACAATGATGTTGCAATTGACCTT-ATTGTTCAACATATCCGT 678
|||||||||||||||| || ||| | |||||| | || || ||| ||||||||||
Sbjct 835 TCATTCCTCGAGGAGGTGATAATCACGTTGCAGTCGAT-TTGATTACGCAACATATCCAC 893
Query 679 ACAAAGCT-GTGCCAACACAATCTCTGTAAGATATACTCAAACATCTTCATCATATCT-- 735
||||| || | || | || ||||||| || || ||| |||| | || || ||||
Sbjct 894 ACAAAACTTGGGC-AGCATGATCTCTGCAAAATCTACCCAAATGT-TT-ATGTTATCCAG 950
Query 736 TCAACATTCCAGATCAA-AGGAATGCATACTCTTATCCGCGACATCAACACAACAAAGCA 794
|||||||| ||||| || ||| |||||||| ||||| || || | ||| | |||||||
Sbjct 951 TCAACATTTCAGAT-AAGAGGCATGCATACACTTATTCGGGAAAAGGACATATCAAAGCA 1009
Query 795 TGA-TTTCGTCTTTTACGCTGACCGATTGATTCGACTGGTCGTGGAACATGGACTTGGTC 853
||| ||| || ||||| | || || | ||||| ||||||||||| ||||| |||||||
Sbjct 1010 TGACTTT-GTGTTTTATTCAGATAGACTCATTCGTCTGGTCGTGGAGCATGGTCTTGGTC 1068
Query 854 ATCTT-CCTTTCACAGAGAAACA-GATCACC-ACTCCAACAGG-GTCAGTGTACACTGGA 909
|| || || ||||| |||||||| | | | ||||||||||| | | || || || ||
Sbjct 1069 AT-TTGCCATTCACTGAGAAACAAG-T-AGTTACTCCAACAGGAG-CTGTATATACCGGT 1124
Query 910 GTCGACTTCTGCAAGAGA-TTGTGTGGCGTCTCAGTGATCAGAAGTGGAGAAAGCATGGA 968
|| || |||||||||| | || ||||| |||||| | || |||||||| |||||||||||
Sbjct 1125 GTTGATTTCTGCAAGAAACTT-TGTGGGGTCTCAATTATTAGAAGTGGTGAAAGCATGGA 1183
Query 969 GAATGCACTAAGAGCTTGCTGCAATGGAATTAAGATTGGTAAAATTCTCATTCAC 1023
|||||| || | ||||||||||| |||||||| || || || |||||||| |||
Sbjct 1184 AAATGCATTACGCGCTTGCTGCAAAGGAATTAAAATAGGGAAGATTCTCATCCAC 1238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68724546105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5