BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896713
Length=807
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10960.1 | Symbols: ATAZG1, AZG1 | AZA-guanine resistant1 | ... 861 0.0
> AT3G10960.1 | Symbols: ATAZG1, AZG1 | AZA-guanine resistant1
| chr3:3424813-3426997 REVERSE LENGTH=2185
Length=2185
Score = 861 bits (466), Expect = 0.0
Identities = 535/569 (94%), Gaps = 1/569 (0%)
Strand=Plus/Plus
Query 226 CTTCTCCGGGATAAACAAAGGATATTTCTGGGAAGCTCTGGTGACATTCCTCTACGTTGG 285
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1382 CTTCTCCGGGATAAACAAAGGACATTTCTGGGAAGCTCTGGTGACATTCCTCTACGTTGA 1441
Query 286 TA-TTTGGATACGACAGGAACGCTTTACTCAATGGCTAGATTCGCCGGATTCGTCGACGA 344
|| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1442 TATTTTGGATACGACGGGAACGCTTTACTCCATGGCTAGATTCGCCGGATTCGTCGACGA 1501
Query 345 GAAAGGAGATTTCGCCGGACAGTATTTCGCGTTTATGTCTGACGCGTCTACGATTGTGAT 404
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1502 GAAAGGAGATTTCGCCGGACAGTATTTCGCGTTTATGTCTGACGCGTCTGCGATTGTGAT 1561
Query 405 CGGATCGTTGCTTGGTACATCTCCGGTGACGGTTTTCATCGAATCGTCGACGGGGATACG 464
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
Sbjct 1562 CGGATCGTTGCTTGGTACATCTCCGGTGACTGTTTTCATCGAGTCGTCGACGGGGATAAG 1621
Query 465 TGAAGGAGGAAGGACGGGGCTAACTGCGATTACGGTGGCGGTTTATTTCTTCTTAGCGAT 524
|||||||| |||||||| ||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 1622 AGAAGGAGGGAGGACGGGTCTAACGGCGATTACGGTGGCTGTTTATTTCTTGTTAGCGAT 1681
Query 525 GTTTTTCACGCCATTGCTAGCTTCGATTCCAGCTTGGGCGGTTGGTCCACCGTTGATATT 584
||||||||| || ||||||||||||||||| || |||||||||||||| |||||||||||
Sbjct 1682 GTTTTTCACACCGTTGCTAGCTTCGATTCCCGCATGGGCGGTTGGTCCGCCGTTGATATT 1741
Query 585 AGTCGGAGTGATGATGATGAAATCGGTAACGGAGATCAACTGGGAAGATATGAGGGAAGT 644
|||||||||||||||||||||||| || || ||||| | |||||||||||||| || |
Sbjct 1742 AGTCGGAGTGATGATGATGAAATCAGTCACAGAGATTGATTGGGAAGATATGAGAGAGGC 1801
Query 645 GATTCCGGCATTCGTGACAATGATTCTAATGCCGTTGACTTACTCCGTCGCGTATGGATT 704
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1802 GATTCCGGCATTTGTGACAATGATTCTGATGCCGTTGACTTACTCCGTCGCGTATGGATT 1861
Query 705 GATCGGAGGGATTGGGAGCTACGTGGTGTTGCATCTATGGGATTGGGGAGAAGAAGGATT 764
||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 1862 GATCGGAGGGATTGGGAGCTATGTAGTGTTGCATCTATGGGATTGGGGAGAAGAAGGTTT 1921
Query 765 GGTGAAATTAGGGTTTTTGAAAAGGAAAG 793
|||||||||||||||||||||||||||||
Sbjct 1922 GGTGAAATTAGGGTTTTTGAAAAGGAAAG 1950
Score = 355 bits (192), Expect = 3e-97
Identities = 215/226 (95%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 1 ATGTGTCTTCACGGACGAATGGAGAGTCCAACGTTTTGGCTT-GGTATCGTCGGATTCGT 59
|||||| |||||||||||||||||||||||||||| ||| || |||||||||||||||||
Sbjct 1128 ATGTGTATTCACGGACGAATGGAGAGTCCAACGTTCTGG-TTAGGTATCGTCGGATTCGT 1186
Query 60 GATCATAGCTTATTTTTTGGTGAAGAACGTGAAAGGAGCGATGATCTACGGGATCGTCTT 119
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1187 GATCATAGCTTATTGTTTGGTAAAGAACGTGAAAGGAGCGATGATCTACGGGATCGTCTT 1246
Query 120 CGTAACGGCCGTTTCGTGGTTCCGTAACACAGAGGTAATGGCGTTTCCGAACACATCGGC 179
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1247 CGTAACGGCCGTTTCGTGGTTCCGTAACACAGAGGTAACGGCGTTTCCGAACACATCGGC 1306
Query 180 CGGTGACGCAGCTCATGATTATTTTAAAAAGATTGTTGATGTACAC 225
||| || ||||||||||||||||| |||||||| ||||||||||||
Sbjct 1307 CGGAGATGCAGCTCATGATTATTTCAAAAAGATCGTTGATGTACAC 1352
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39283102954
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5