BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896718
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27970.1 | Symbols: | Exonuclease family protein | chr3:103... 1674 0.0
AT5G40310.1 | Symbols: | Exonuclease family protein | chr5:161... 929 0.0
> AT3G27970.1 | Symbols: | Exonuclease family protein | chr3:10389609-10391544
FORWARD LENGTH=1074
Length=1074
Score = 1674 bits (906), Expect = 0.0
Identities = 1019/1075 (95%), Gaps = 2/1075 (0%)
Strand=Plus/Plus
Query 1 ATGGATTACAGATCATCAATGGAGTCTTCGGAAACCCTAAGGAACAAGTGTGCCGCTTGT 60
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1 ATGGATTACCGATCATCAATGGAGTCTTCGGAAACTCTAAGGAACAAGTGTGCCGCCTGT 60
Query 61 TATAGGCAATTCAACAAAATGGAACATTTAGTCGAGCACATGAAGATCTCTTATCATTCG 120
|| ||||||||||||||| |||||||||| || |||||||||||||||||||||||||||
Sbjct 61 TACAGGCAATTCAACAAACTGGAACATTTGGTGGAGCACATGAAGATCTCTTATCATTCG 120
Query 121 GGTCATGAACCTACTTGTGGCGTTTGCAAGAAACATTGCCGATCTTTTGAGTCCCTCCGG 180
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 121 GGTCATGAACCTACTTGTGGCGTTTGCAAGAAACATTGCAGGTCTTTTGAGTCCCTCCGA 180
Query 181 GAACATCTCATAGGGCCGTTGCCAAAACAAGAATGCAAGAACATTTTCAGCCTTCGCGGA 240
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 GAACATCTCATAGGGCCATTGCCAAAACAAGAATGCAAGAACATTTTCAGCCTTCGTGGA 240
Query 241 TGCAGATTTTGCATGACGATCCTCGAAAGCCCGAATGCTCGTAGGATCCATCAAGAGAGA 300
|||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||
Sbjct 241 TGCAGATTTTGCATGACGATACTCGAAAGCCCGAATTCTCGTAGAATCCATCAAGAGAGA 300
Query 301 TGCCAATTTTCGAGCGTGAACTCTGGACTGACGACTCGCATGGCGGCTTTAGGTC-TAAG 359
|||||||| |||||||| ||||||||| |||||||||| ||||| |||||||| | ||||
Sbjct 301 TGCCAATTCTCGAGCGTCAACTCTGGATTGACGACTCGAATGGCAGCTTTAGG-CTTAAG 359
Query 360 GGATAAGGCCATGATCGACTACACGTCCTCGCGGTCTCCACGAGTGGTTGCACTCTCTTG 419
|||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||
Sbjct 360 AGATAAGGCCATGATCGACTACACGTCATCACGGTCTCCAAGAGTGGTTGCACTCTCTTG 419
Query 420 CAAGATGGTAGGAGGAGGAAGCGACGGGTCGTTGGATCTGTGTGCGAGGGTTTGCATAAC 479
||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||
Sbjct 420 CAAGATGGTAGGAGGAGGAAGTGACGGGTCGTTGGATCTATGCGCGAGGGTTTGCATAAC 479
Query 480 GGATGAGAGTGACAACGTTGTGTTCCACACGTATGTGAAACCTTCGATGACCGTAACAAG 539
||||||||||||||||||| | || |||||||||||||||||||||||| |||| || ||
Sbjct 480 GGATGAGAGTGACAACGTTATCTTTCACACGTATGTGAAACCTTCGATGGCCGTGACTAG 539
Query 540 CTATAGGTACGAGACGACGGGGATACGTCCGGAGAATCTAAGGGACGCAATGCCGTTGAA 599
|||||||||||||||||| |||||||| ||||| |||||||||||||||||||| || ||
Sbjct 540 CTATAGGTACGAGACGACAGGGATACGCCCGGAAAATCTAAGGGACGCAATGCCATTAAA 599
Query 600 ACAAGTACAAAGAAAGATTCAAGAGTTTCTTTGTAATGGAGAACCTATGTGGAAGATTCG 659
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 600 ACAAGTACAAAGAAAGATTCAAGAGTTTCTTTGTAATGGAGAACCCATGTGGAAGATTCG 659
Query 660 TCCAAGAGGTGGAAAAGCGAGGATTCTCGTGGGACATGGCCTCGATCACGATCTTGACTG 719
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 660 TCCAAGAGGTGGAAAAGCGAGGATTCTCGTGGGGCATGGCCTCGATCACGATCTTGACCG 719
Query 720 CCTTCAACTTGAATATCCTTCTTCCATGATAAGGGATTCTGCGAAATACCCACCGTTGAT 779
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 720 CCTTCAACTTGAATATCCTTCTTCCATGATAAGGGATACTGCGAAATACCCACCGTTGAT 779
Query 780 GAAAACAAGCAAGCTGAGCAACTCTCTCAAGTACTTAACCCAAGCCTATCTCGGGTATGA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GAAAACAAGCAAGCTGAGCAACTCTCTCAAGTACTTAACCCAAGCCTATCTCGGGTATGA 839
Query 840 TGTTCATTTTGGGATACAAGACCCGTATGAAGATTGTGTAGCGACAATGAGGCTTTACAC 899
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 840 TGTTCATTTTGGGATACAAGACCCTTATGAAGATTGTGTAGCGACGATGAGGCTTTACAC 899
Query 900 GAGAATGAGATATCAGAAACACAAGATTGAAGCTTACCCTTTAGCCGCCGATGCGCAGAA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GAGAATGAGATATCAGAAACACAAGATTGAAGCTTACCCTTTAGCCGCCGATGCGCAGAA 959
Query 960 CCGTAGCAACCAGGTGGTTTGGAGGCAGAGCGAAGTCGAGAGGATGTCTCCTGATGAAAT 1019
||||||||||||||||| |||||||||||| || | ||||||||||||||||||||||||
Sbjct 960 CCGTAGCAACCAGGTGGCTTGGAGGCAGAGTGAGGCCGAGAGGATGTCTCCTGATGAAAT 1019
Query 1020 GCTCTCCATCTCTCGTTCTGACTATTATTGCTGGTGCTTGGACTCCCTCGCTTAA 1074
|||||| ||||||||||| |||||||| ||||||||||| ||||| || ||||||
Sbjct 1020 GCTCTCAATCTCTCGTTCCGACTATTACTGCTGGTGCTTAGACTCACTAGCTTAA 1074
> AT5G40310.1 | Symbols: | Exonuclease family protein | chr5:16113272-16115816
REVERSE LENGTH=1047
Length=1047
Score = 929 bits (503), Expect = 0.0
Identities = 862/1036 (83%), Gaps = 22/1036 (2%)
Strand=Plus/Plus
Query 40 AGGAACAAGTGTGCCGCTTGTTATAGGCAATTCAACAA-AATGGAACATTTAGTCGAGCA 98
||||||||||||| | |||||||||||||||||||| || ||| || || || || ||
Sbjct 13 AGGAACAAGTGTGGAGGGTGTTATAGGCAATTCAACAAGAA-GGAGCACTTGGTGGAACA 71
Query 99 CATGAAGATCTCTTATCATTCGGGTCATGAACCTACTTGTGGCGTTTGCAAGAAACATTG 158
||||| ||||||||||||||||| |||||||||||||||||| ||||||| ||||||||
Sbjct 72 CATGAGGATCTCTTATCATTCGGTTCATGAACCTACTTGTGGTATTTGCAACAAACATTG 131
Query 159 CCGATCTTTTGAGTCCCTCCGGGAACATCTCATAGGGCCGTTGCCAAAACAAGAATGCAA 218
|||||||||||| |||||||| ||||||||||| ||||| ||||| ||||||||||| ||
Sbjct 132 CCGATCTTTTGACTCCCTCCGTGAACATCTCATTGGGCCATTGCCGAAACAAGAATGTAA 191
Query 219 GAACATTTTCAGCCTTCGCGGATGCAGATTTTG-CATGACGATCCTCGAAAGCCCGAATG 277
||||||||||||| ||||||| |||||||| || | | ||||||||||||||||| || |
Sbjct 192 GAACATTTTCAGCATTCGCGGCTGCAGATTCTGTC-TTACGATCCTCGAAAGCCCCAACG 250
Query 278 CTCGTAGGATCCATCAAGAGAGATGCCAATTTTCGAGCGTGAAC-TCTGGACTGACGACT 336
||||||| |||||||||||||||||||| | || | ||| || |||||| | | || |
Sbjct 251 CTCGTAGAATCCATCAAGAGAGATGCCAGCTCTCAAACGT-CACTTCTGGATTAATGATT 309
Query 337 CGCATGGCGGCTTTAGGTCTAAGGGATAAGGCCATGATCGACTACACGTCCTCGCGGTCT 396
|| |||||||| ||||| ||||| | || | | || |||||||| || ||| ||||
Sbjct 310 CGTATGGCGGCCTTAGGCCTAAGAAACAACTCAACAATTGACTACACTTCTTCGAGGTCA 369
Query 397 CCACGAGTGGTTGCACTCTCTTGCAAGATGGTAGGAGGAGGAAGCGACGGGTCG-TTGGA 455
|| |||||||| |||||||| ||||||||||| |||||||| || ||||| ||| || ||
Sbjct 370 CCTCGAGTGGTGGCACTCTCATGCAAGATGGTTGGAGGAGGCAGTGACGGATCGCTT-GA 428
Query 456 TCTGTGTGCGAGGGTTTGCATAACGGATGAGAGTGACAACGTTGTGTTCCACACGTATGT 515
|| || || || |||||||| ||||||||||| || || ||||||||||||||||||||
Sbjct 429 CCTATGCGCAAGAGTTTGCATTACGGATGAGAGCGAAAATGTTGTGTTCCACACGTATGT 488
Query 516 GAAACCTTCGATGA-CCGTAAC-AAGCTATAGGTACGAGACGACGGGGATACGTCCGGAG 573
||| || |||| | ||||||| || |||||||| |||| ||| ||||| || || ||
Sbjct 489 GAAGCCAACGAT-ACCCGTAACGAA-TTATAGGTATGAGATGACAGGGATTCGACCTGAA 546
Query 574 AATCTAAGGGACGCAATGCCG-TTGAAA-CAAGTACAAAGAAAGATTCAAGAGTTTCTTT 631
|||||||||||||||||| || || ||| || | ||| |||||| |||||||||||||||
Sbjct 547 AATCTAAGGGACGCAATG-CGATT-AAAGCACGCACAGAGAAAGGTTCAAGAGTTTCTTT 604
Query 632 GTAATGGAGAACCTATGTGGAAGATTCGTCCAAGAGGTGGAAAAGCGAGGATTCTCGTGG 691
||||||||||||| ||||||||||||||||||||| ||| ||||| ||||||||||| |
Sbjct 605 GTAATGGAGAACCAATGTGGAAGATTCGTCCAAGAAATGGGAAAGCAAGGATTCTCGTTG 664
Query 692 GACATGGCCTCGATCACGATCTTGACTGC-CTTCAACTTGAATATCCTTCTTCCATGATA 750
||||||| || ||| || ||||||||| | ||||||||||||||| |||| || ||||||
Sbjct 665 GACATGGACTTGATAACCATCTTGACT-CTCTTCAACTTGAATATTCTTCCTCTATGATA 723
Query 751 AGGGATTCTGCGAAATACCCACCGTTGATGAAAACAAGCAAGCTGAGCAACTCTCTCAAG 810
|| ||| ||||| ||||||| || ||||||||| |||||||||| |||||||||||||||
Sbjct 724 AGAGATACTGCGGAATACCCTCCATTGATGAAATCAAGCAAGCTAAGCAACTCTCTCAAG 783
Query 811 TACTTAACCCAAGCCTATCTCGGGTATGATGTTCATTTTGGGA-TACAAGACCCGTATGA 869
||||||||||||||||||||||| |||||| ||||| | |||| ||||||| || || ||
Sbjct 784 TACTTAACCCAAGCCTATCTCGGTTATGATATTCATGT-GGGAATACAAGATCCTTACGA 842
Query 870 AGATTGTGTAGCGACAATGAGGCTTTACACGAGAATGAGATATCAGAAACACAAGATTGA 929
|| ||||| |||||||||||||| |||||||||||| ||||||||||||||| | ||
Sbjct 843 GGACTGTGTCGCGACAATGAGGCTATACACGAGAATGCGATATCAGAAACACAGGGCCGA 902
Query 930 AGCTTACCCTTTAGCCGCCGATGCGCAGAACCGTAGCAACCAGGTGGTTTGGAGGCAGAG 989
|| || || | ||| | || ||||||||| | ||| | || ||||||||||
Sbjct 903 GGCCTATCCGCTGGCCTCGGACACGCAGAACCACAATAACTTTGCGGCGTGGAGGCAGAA 962
Query 990 CGAAGTCGAGAGGATGTCTCCTGATGAAATGCTCT-CCATCTCTCGTTCTGACTATTATT 1048
||| | |||||||||||||| || || ||||| || | || ||||| |||||||| |
Sbjct 963 TGAACTAGAGAGGATGTCTCCAGAGGAGTTGCTCGACCTT-TCACGTTCAGACTATTACT 1021
Query 1049 GCTGGTGCTTGGACTC 1064
||||||||||||||||
Sbjct 1022 GCTGGTGCTTGGACTC 1037
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52610171160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5