BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896724
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28060.1 | Symbols: | Nodulin MtN21 /EamA-like transporter ... 608 3e-173
> AT3G28060.1 | Symbols: | Nodulin MtN21 /EamA-like transporter
family protein | chr3:10445860-10446846 FORWARD LENGTH=648
Length=648
Score = 608 bits (329), Expect = 3e-173
Identities = 408/447 (91%), Gaps = 2/447 (0%)
Strand=Plus/Plus
Query 522 TCTTTTGGTACCTCCATCGCCACCGTCGAATTCTAATTGGGTCATTGGCGGAGGTCTTTT 581
||||| || |||||| |||| |||||| |||| |||||||||||| || ||||||||| |
Sbjct 113 TCTTTCGGCACCTCCCTCGCAACCGTCCAATTATAATTGGGTCATCGGGGGAGGTCTTCT 172
Query 582 AGCCCTTGAGTACATTCTCATTGCCGTCTCTTACATTATTCAGACACATATAATGAGGGA 641
| |||| |||| ||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 173 -G-GGTTGAATACACTCTCATTGCCGTCGCTTACATTGTTCAGACACATATAATGAGGGA 230
Query 642 ATATCCATCGGAATTTGCCTTGGCACTTTCCCACAATGTCTGCGTTTCAATCTCTTGTGC 701
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 ATATCCGTCGGAATTTGCCTTGGCACTTTCCCACAATGTCTGCGTTTCAATCTCTTGTGC 290
Query 702 ATTTGTTAGTTTATTTGCGGAGAAGAACCATCCTAGTGCGTGGATTATGAGATCGAAAAT 761
||||||||||||||| | |||| ||||| ||||||| || ||||||||||||||||||||
Sbjct 291 ATTTGTTAGTTTATTCGTGGAGGAGAACAATCCTAGCGCATGGATTATGAGATCGAAAAT 350
Query 762 TATGTTGGTATGCATCGTCGCAACGGGAATGGTAAATTCGACGGGCTATGTTGTTGAGTC 821
||||||| ||||||||||||||||||| |||| ||||||||| ||||||||||||| ||
Sbjct 351 TATGTTGATATGCATCGTCGCAACGGGGGTGGTGAATTCGACGAGCTATGTTGTTGAATC 410
Query 822 ATGGACAGTGCGACATAAGGGGCCAGTATTTCTAGCAATGTTCAGGCCATTATCTATATT 881
||||||||||||| |||||||| | || || |||||||||||||||||||||||||| |
Sbjct 411 ATGGACAGTGCGATATAAGGGGGCTGTGTTCCTAGCAATGTTCAGGCCATTATCTATCGT 470
Query 882 AACCGCAGTGGTACTAGGGGCAATATTTCTAGGCGATTCTCTCTATCTCGGAAGTGTGAT 941
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 AACCGCTGTCGTACTAGGGGCAATATTTCTAGGCGATTCTCTCTATCTCGGAAGTGTGAT 530
Query 942 TGGTGGAACGTTGATATCAATCGGTTT 968
|||||||||||||||||||||||||||
Sbjct 531 TGGTGGAACGTTGATATCAATCGGTTT 557
Score = 99.0 bits (53), Expect = 8e-20
Identities = 64/69 (93%), Gaps = 1/69 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGGGAGATTCTGTCAAAGAGACGGCGGGATCATGACGGCGATGGTGGTGGTGGTG 60
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
Sbjct 1 ATGGCTGGGAGATTCTGTCAAAGAGACGGCGGGATCATGACGGCAATGGTGGCGGTGGAG 60
Query 61 ATCTCCGAC 69
|| || |||
Sbjct 61 AT-TCTGAC 68
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53513780970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5