BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg896728

Length=267
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G28130.2 | Symbols:  | nodulin MtN21 /EamA-like transporter ...   403    4e-112


> AT3G28130.2 | Symbols:  | nodulin MtN21 /EamA-like transporter 
family protein | chr3:10465516-10468911 FORWARD LENGTH=1346
Length=1346

 Score =  403 bits (218),  Expect = 4e-112
 Identities = 250/265 (94%), Gaps = 3/265 (1%)
 Strand=Plus/Plus

Query  1    ATGGCCTCCATTAGTCTCCGTCGGAGAGACGCCGTGTTATTGACGGCGATGTTAGCGACT  60
            ||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct  72   ATGGCCTCCATTACTCTCCGTCGGAGAGACGCCGTGTTATTGACGGCCATGTTGGCGACT  131

Query  61   GAAACCGGAAACGTGGCGATGAATACTCTGTTTAAAGCAGCAGCTACTTCAAAAGGCCTT  120
            ||||||||||| ||||| ||||||||| ||||||||||||| |  |||||||||||||||
Sbjct  132  GAAACCGGAAATGTGGCTATGAATACTTTGTTTAAAGCAGC-G--ACTTCAAAAGGCCTT  188

Query  121  AATTCTTATACcttcctcatctactcttatctcattggctctcttgttcttcttccttct  180
            ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct  189  AATTCTTATACCTTCCTCATCTATTCTTATCTCATTGGCTCTATTGTTCTTCTTCCTTCT  248

Query  181  cacatcttctcttATAGGTCAAGATCACTTCCTCCATTAAGTTTTTCAATACTCTGTAAA  240
            ||||||||||||||||||||||||||||||||| || ||||| ||||||| |||||||||
Sbjct  249  CACATCTTCTCTTATAGGTCAAGATCACTTCCTTCACTAAGTCTTTCAATTCTCTGTAAA  308

Query  241  ATTGGAGTTCTTGGGCTGCTAGGGT  265
            |||||||||||||||||||||||||
Sbjct  309  ATTGGAGTTCTTGGGCTGCTAGGGT  333



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12215063007


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5