BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896729
Length=816
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28130.2 | Symbols: | nodulin MtN21 /EamA-like transporter ... 1297 0.0
AT3G28100.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 544 7e-154
AT3G28070.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 542 2e-153
> AT3G28130.2 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr3:10465516-10468911 FORWARD LENGTH=1346
Length=1346
Score = 1297 bits (702), Expect = 0.0
Identities = 774/809 (96%), Gaps = 4/809 (0%)
Strand=Plus/Plus
Query 10 TCAACGTATCTGATCACAGGATTCATAGGCATCGAATACAGTAACCCAACTTTAGCTTCA 69
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 333 TCAACGTATCTGATCACAGGATTCATAGGCATCGAATACAGCAACCCAACCTTAGCTTCA 392
Query 70 GCCATTAGCAATATCAATCCTGCAATTACCTTCATCCTCGCCATTATCTTCAGAATGGAG 129
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 393 GCCATTAGCAATATCAATCCTGCCATTACCTTCATCCTTGCCATTATCTTCAGAATGGAG 452
Query 130 AAAGCATCTTTCAAAGAAAAGAGTAGTGTAGCCAAAATGGTTGGGACAATAGTTTCACTA 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 AAAGCATCTTTCAAAGAAAAGAGTAGTGTAGCCAAAATGGTTGGGACAATAGTTTCACTA 512
Query 190 GTTGGCGCACTTGTGGTAGTTCTCTACCATGGTCCACGAGTCTTCACCCCATCTTCTCCG 249
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 GTTGGCGCACTTGTGGTAGTTCTCTACCATGGTCCACGAGTCTTCACCCCATCTTCTCCA 572
Query 250 CCGTTTCAAGAACTCCATCAGCTTCTTCCGCCGTTATCATCCTCAAACTCCGATTGGATC 309
|| |||| | |||||| |||||||||| ||||||||||||||||||||| |||||||||
Sbjct 573 CCATTTCCACAACTCCGTCAGCTTCTTTTGCCGTTATCATCCTCAAACTCGGATTGGATC 632
Query 310 ATCGGTGGTTGTCTTTTAGCCATCAAAGACACCCTCGTTCCTGTTGCTTTCATTCTTCAA 369
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 633 ATCGGTGGTTGTCTTTTAGCCATCAAAGACACCCTCGTTCCTGTTGCTTTTATTCTTCAA 692
Query 370 GCACACATAATGAAGATATACCCAGCACCATTCACGGTCTCTTTCTTCTATTTTCTGATT 429
||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 693 GCACATATAATGAAGTTATATCCAGCACCATTCACGGTCTCTTTCTTCTATTTTCTGATT 752
Query 430 GCTTCAATCTTGACGTCATTGATCGGAATCGTAGCAGAAGAGAACAATCCGAGCATATGG 489
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 753 GCTTCAATCTTGACGTCATTGATCGGAATCGTAGCAGAAAAGAACAATCCGAGCATATGG 812
Query 490 ATCATTCATTTTGACATTACATTGGTTTGCATAGTTGTCGGGGGAATATTTAATCCAGGA 549
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 813 ATCATTCATTTTGACATTACATTAGTTTGCATAGTTGTTGGGGGAATATTTAATCCAGGA 872
Query 550 TATTACGCGATTCATCTGTGGGCAGTACGTAATAAAGGACCTGTTTACTTAGCTATATTC 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 TATTACGCGATTCATCTGTGGGCAGTACGTAATAAAGGACCTGTTTACTTAGCTATATTC 932
Query 610 AGACCTTTATCGATTTTAATAGCAGTGATTATGGGAGCGATTTTTCTTGGCGATT-TGTT 668
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||
Sbjct 933 AGACCTTTATCGATTTTAATAGCAGTGATTATGGGAGCGATTTTTCTTGGAGATTCTTTT 992
Query 669 CTACCTCGGAAGTTTGGTCGGAGGGATTTTGATATCATTAGGGTTTTACACTGTAATGTG 728
||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 993 -TACCTAGGAAGTTTGGTCGGAGGGATTTTGATATCGTTAGGGTTTTACACTGTGATGTG 1051
Query 729 GGGAAAAGCAAAAGAAGAGAAGACTCAATTGTTGTCGCTTTCAGAGGAAGCTCCTCTTCT 788
||||||||||||||||| ||||||||| || |||||||| ||||||||| ||||||||||
Sbjct 1052 GGGAAAAGCAAAAGAAGGGAAGACTCAGTTCTTGTCGCTGTCAGAGGAAACTCCTCTTCT 1111
Query 789 A-ATCAAAAACATAGACGACCAAATATAG 816
| | | ||||||||||||||| |||||||
Sbjct 1112 AGA-CGAAAACATAGACGACCGAATATAG 1139
> AT3G28100.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr3:10456099-10460965 FORWARD LENGTH=1266
Length=1266
Score = 544 bits (294), Expect = 7e-154
Identities = 621/775 (80%), Gaps = 38/775 (5%)
Strand=Plus/Plus
Query 8 GATCAACGTATCTGATCACAGGATTCATAGGCATCGAATACAGTAACCCAACTTTAGCTT 67
|||||| |||| |||||||||||| |||||||||||||||||| | |||||| ||||| |
Sbjct 315 GATCAATGTATGTGATCACAGGATACATAGGCATCGAATACAGCAGCCCAACCTTAGCCT 374
Query 68 CAGCCATTAGCAATATCAATCCTGCAATTACCTTCATCCTCGCCATTATCTTCAGAATGG 127
| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 375 CTGCCATTAGCAATATCACTCCTGCTCTTACCTTCATCCTCGCCATTATCTTCAGAATGG 434
Query 128 AGAAAGCATCTTTCAAAGAAAAGAGTAGTGTAGCCAAAATGGTTGGGACAATAGTT-TCA 186
| |||| |||||||||||||| ||| |||||||||||| || | ||||| ||| || ||
Sbjct 435 AAAAAGTATCTTTCAAAGAAAGGAGCAGTGTAGCCAAAGTGATGGGGACGATA-TTGTCG 493
Query 187 CTAGTTGGCGCACTTGTGGTAGTTCTCTACCATGGTCCACGAGTCTTCACCCCATCTTCT 246
|| | ||||||||||| || |||||||||||||||||||| ||||| ||||||||
Sbjct 494 TTAATAGGCGCACTTGTTGTGGTTCTCTACCATGGTCCACGTGTCTTTGTTGCATCTTCT 553
Query 247 CCGCCGTTTCA-AGAACT-CCATCAGCTT-CTTCCGCCGTTATCATCCTCAAACTCCGAT 303
||||||| | | | |||| || ||||||| || |||||||||||||| ||||| || |||
Sbjct 554 CCGCCGTAT-ATA-AACTTCCGTCAGCTTTCT-CCGCCGTTATCATCTTCAAATTCAGAT 610
Query 304 TGGATCATCGGTGGTTG-TCTT-TTAGCCATCAA-AGACACCCTCGTTCCTGTTGCTTTC 360
||| ||||||| || | |||| ||| |||| || ||||| | | ||| ||||| |||||
Sbjct 611 TGGCTCATCGGCGGA-GCTCTTCTTA-CCAT-AAGAGACATCTTTGTTTCTGTTTCTTTC 667
Query 361 ATTCTTCAAGCACACATAATGAAG-ATATACCCAGCACCATTCACGGTCTCTTTCTTCTA 419
||||| || ||| | ||||||| | | ||| |||||| ||||||| ||||| ||| ||||
Sbjct 668 ATTCTCCAGGCAAAAATAATGA-GTACATATCCAGCAGCATTCACAGTCTCCTTCCTCTA 726
Query 420 TTTTCTGATTGCTT-CAATCTTGACGTCATTGATCGGAATCGTAGCAGAAGAGAACAATC 478
|| | || | || ||||| |||| ||| |||| ||| | |||| ||| |||||||||
Sbjct 727 CATTGT-ATCGGTTTCAATCGTGACTTCAATGATTGGACTAGTAGTGGAAAAGAACAATC 785
Query 479 CGAGCATATGGATCATTC-ATTTTGACATTACATTGGTTTGCATAGTTGT--CGGGGG-A 534
| ||| | |||||||||| |||| || ||||| ||| | || | |||| | || |
Sbjct 786 CAAGCGTTTGGATCATTCGATTT-GATATTACTTTGATAA-CA-A-TTGTAACTATGGCA 841
Query 535 ATATTTAATCCAGGATATTACGCGATTCAT-CTGTGGGCAGTACGTAATAAAGGACCTGT 593
||| ||| | ||| ||| || | ||| ||| | ||| |||||||| | ||||||||| |
Sbjct 842 ATAATTACTTCAGTATACTATGTGATCCATTCA-TGGACAGTACGTCACAAAGGACCTCT 900
Query 594 TTACTTAGCTATATTCA-GACCTTTATCGATTTTAATAGCAGTGATTATGGGAGC-GATT 651
|||||||| ||||| | | ||||| |||||||||||||| ||| ||||| | || | ||
Sbjct 901 ATACTTAGCGATATTTAAG-CCTTTGTCGATTTTAATAGCGGTGGTTATGAGCGCAG-TT 958
Query 652 TTTCTTGGCGATT-TGTTCTACCTCGGAAGTTTGGTCGGAGGGATT-TTGATATCATTAG 709
||||| ||||| | | ||| |||||| ||||| | ||||| | | |||||| | || |
Sbjct 959 TTTCTCAACGATTCTCT-CTATCTCGGATGTTTGATAGGAGG-ACTATTGATAACGTTGG 1016
Query 710 GGTTTTACACTGTAATGTGGGGAAAAGCAAAAGAAGAGAA-GACTCAATTGTTGT 763
|||||||| |||| |||||||| |||||||| |||||||| || |||||||||||
Sbjct 1017 GGTTTTACGCTGTGATGTGGGGTAAAGCAAACGAAGAGAAAGA-TCAATTGTTGT 1070
> AT3G28070.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr3:10447922-10451034 FORWARD LENGTH=1314
Length=1314
Score = 542 bits (293), Expect = 2e-153
Identities = 611/761 (80%), Gaps = 36/761 (5%)
Strand=Plus/Plus
Query 8 GATCAACGTATCTGATCACAGGATTCATAGGCATCGAATACAGTAACCCAACTTTAGCTT 67
|||||| |||| |||||||||||| |||||||||||||||||| | |||||| ||||| |
Sbjct 314 GATCAATGTATGTGATCACAGGATACATAGGCATCGAATACAGCAGCCCAACCTTAGCCT 373
Query 68 CAGCCATTAGCAATATCAATCCTGCAATTACCTTCATCCTCGCCATTATCTTCAGAATGG 127
| ||||| | |||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 374 CCGCCATAAACAATATCACTCCTGCTCTTACCTTCATCCTCGCCATTATCTTCAGAATGG 433
Query 128 AGAAAGCATCTTTCAAAGAAAAGAGTAGTGTAGCCAAAATGGTTGGGACAATAGTT-TCA 186
| |||| |||||||||||| | ||||||| |||||||| || | ||||| ||| || |||
Sbjct 434 AAAAAGTATCTTTCAAAGAGAGGAGTAGTCTAGCCAAATTGATGGGGACGATA-TTGTCA 492
Query 187 CTAGTT-GGCGCACTTGTGGT-AGTTCTCTACCATGGTCCACGAGTCTTCACCC-CATCT 243
|| | | || ||||||||||| | || ||||||| |||||||| |||||| | | |||||
Sbjct 493 CT-GATAGGTGCACTTGTGGTGATTT-TCTACCACGGTCCACGTGTCTTC-CTCGCATCT 549
Query 244 TCTCCGCCGTTTCAAGAACT-CCATCAGCTT-CTTCCGCCGTTATCATCCTCAAACTCCG 301
|||||||| | | | |||| || |||| || || || ||||| ||||| ||||||||||
Sbjct 550 TCTCCGCCCTATGTA-AACTTCCGTCAGTTTTCT-CCACCGTTGTCATCTTCAAACTCCG 607
Query 302 ATTGGATCATCGGTGGTTG-TCTTTTAGCCAT-CAAAGACACCCTCGTTCCTGTTGCTTT 359
||||| |||||||||| | |||| || |||| ||| | || ||||| ||||| ||||
Sbjct 608 ATTGGCTCATCGGTGGA-GCTCTTCTAACCATGCAAGG-CATATTCGTTTCTGTTTCTTT 665
Query 360 CATTCTTCAAGCACACATAATGAA-GATATACCCAGCACCATTCACG-GTCTC-TTTCTT 416
||||||||| ||||| ||||||| | |||| |||||| |||||| | ||||| ||||||
Sbjct 666 CATTCTTCAGGCACATATAATGAGTG-TATATCCAGCAGCATTCA-GAGTCTCCTTTCTT 723
Query 417 CTATTTTCTGAT-TGCTTCAATCTTGACGTC-ATTGATCGGAATCGTAGCAGAAGAGAAC 474
|| | | || || ||||||| |||| || | ||| ||| | |||| ||| |||||
Sbjct 724 -TACACTGT-ATGTGTTTCAATCGTGACCTCGAC-GATTGGACTAGTAGTTGAAAAGAAC 780
Query 475 AATCCGAGCATATGGATCATTCATTTTGACATTACATTGGTTTGCA-TAGTTGTCGGGGG 533
|| || ||| | |||||||||||||| || ||||| ||| || || | ||| | ||
Sbjct 781 AACCCAAGCGTTTGGATCATTCATTTCGATATTACTTTGATTA-CAATTGTTACCATGGC 839
Query 534 AATATTTAA-TCCAGGATATTACGCGATTCAT-CTGTGGGCAGTACGTA-ATAAAGGACC 590
|||| | || | ||| ||| || | ||||||| | ||| ||||||| | ||||||||||
Sbjct 840 AATAGT-AACTTCAGTATACTATGTGATTCATTCA-TGGACAGTACG-ACATAAAGGACC 896
Query 591 TGTTTACTTAGCTATATTCAGACCTTTATCGATTTTAATAGCAGTGATTATGGGAGCGAT 650
| | |||||||| ||||| | |||||| || ||||||||||||||| ||||||| || ||
Sbjct 897 TCTGTACTTAGCCATATTTAAACCTTTGTCCATTTTAATAGCAGTGGTTATGGGGGCCAT 956
Query 651 TTTTCTTGGCGATT-TGTTCTACCTCGGAAGTTTGGTCGGAGGGATTTTGATATCATTAG 709
|||||| |||| | | ||| |||||| ||||| ||||||| ||||||||| ||||||
Sbjct 957 TTTTCTCAATGATTCTCT-CTATCTCGGATGTTTGATCGGAGGAATTTTGATAACATTAG 1015
Query 710 GGTTTTACACTGTAATGTGGGGAAAAGCAAAAGAAGAGAAG 750
| |||||| |||| |||||||| |||||||| |||||||||
Sbjct 1016 GCTTTTACGCTGTGATGTGGGGCAAAGCAAACGAAGAGAAG 1056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39735210277
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5