BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896731
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28150.1 | Symbols: TBL22 | TRICHOME BIREFRINGENCE-LIKE 22 |... 1797 0.0
> AT3G28150.1 | Symbols: TBL22 | TRICHOME BIREFRINGENCE-LIKE 22
| chr3:10471842-10473754 REVERSE LENGTH=1382
Length=1382
Score = 1797 bits (973), Expect = 0.0
Identities = 1161/1252 (93%), Gaps = 11/1252 (1%)
Strand=Plus/Plus
Query 1 ATGAAA-CAATCATCATCAATATTTCGAGAAAATTCAGAGAAAAAATCAGAGAGATGGAT 59
|||||| | ||| ||||| || ||||| |||| |||||||||||||||||||||||||||
Sbjct 20 ATGAAATC-ATCGTCATCGATTTTTCGTGAAACTTCAGAGAAAAAATCAGAGAGATGGAT 78
Query 60 GATTATGAACATTGGAAGATCATCTCCATTTTTCTTGTCTTCTTTTTGTATAACTCTCTT 119
||| |||||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 79 GATGATGAACATTGGAAGATTTTCTCCATTTTTCTTGTCTTCCTTTTGTATAACTCTTTT 138
Query 120 CTTCACCGGTTTCTTCGTTTATCAGAATCCTTTTAAATCCATTGCTGATCAAAATGTTCT 179
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 139 CTTCACCGGTTTCTTTGTTTATCAGAATCCTTTTAAATCCATCGCTGATCAAAATGTTCT 198
Query 180 TTCTCTCCAACCTCAAATCGATCCTAAATGTGATTTATTCAAGGGACATTGGGTTCCAGA 239
|||| |||||||||||||||||||| | |||||||| |||||||||||||||||||||||
Sbjct 199 TTCTTTCCAACCTCAAATCGATCCTGAGTGTGATTTGTTCAAGGGACATTGGGTTCCAGA 258
Query 240 CAAAAGAGGATCTTTGTACACAAACTCAAGCTGTTCTACAATTCCTGACTCAAAGAACTG 299
||||||||||||||| ||||||||||| |||||| |||| ||||| ||||| ||||||||
Sbjct 259 CAAAAGAGGATCTTTATACACAAACTCGAGCTGTGCTACGATTCCCGACTCGAAGAACTG 318
Query 300 TATAAAACAAGGGAGACCAGAC-AGGAGTTTCTTGTTCTGGAGATGGAAACCAGATGGTT 358
||||||||||||||||| ||| | || |||||||||||||||||||||||| |||||||
Sbjct 319 CATAAAACAAGGGAGACCCGACAAAGA-TTTCTTGTTCTGGAGATGGAAACCCGATGGTT 377
Query 359 GCAATCTTCCTAGGTTTAATCCGAAGGCGTTTCTCGGTCTAGTTCGAGGCAAGAAGATGA 418
|| ||||||| ||||||||||| |||||||||||| || | |||||||| ||||||||||
Sbjct 378 GCGATCTTCCGAGGTTTAATCCAAAGGCGTTTCTCAGTATGGTTCGAGGGAAGAAGATGA 437
Query 419 GTTTTATTGGTGATTCTGTAGCTAGGAACCATATGGAATCTCTTCTTTGCTTGTTGTCAA 478
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 438 ATTTTATTGGTGATTCTGTGGCTAGGAACCATATGGAATCTCTTCTTTGCTTGTTGTCAA 497
Query 479 TGGAAGAAACTCCTAAGGACATTTACAAAGATGGAGAAGATAGAAACAGGATTTGGTACT 538
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 498 TGGAAGAAACTCCTAAGGACATCTACAAGGATGGAGAAGATAGAAACAGGATTTGGTACT 557
Query 539 TTCCGAAACATGATTTTACTCTCTCGACTTCGTGGACTAAGTTTCTTGTAGAGGAACGAG 598
||||||| || ||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 558 TTCCGAAGCACGATTTTACTCTCTCGACCTCGTGGACTAAGTTTCTTGTGGAGGAACGAG 617
Query 599 AGAGGAGGGATGGTAACAATACAGGAACTGGATTGTTTGATCTAGACATTGGCAAGATCG 658
|||| || ||| ||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 618 AGAGAAGAGATAGTAACAATACAGGTACTGGATTGTTTGATCTAGATATCGGCAAGATCG 677
Query 659 ATGAAGGGTGGTTTAAGGGGCTGCCGAATACAGACATTGCTATTGTCTCGGCTGCTCACT 718
|||||||||||||||| || || ||||||||||||||||||||||||||||||||||| |
Sbjct 678 ATGAAGGGTGGTTTAATGGTCTACCGAATACAGACATTGCTATTGTCTCGGCTGCTCATT 737
Query 719 GGTTCTTCAGACCGATATTTATACATAGAGGAGATGAGACACTGGGTTGCATTTACTGTA 778
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 GGTTCTTCAGACCTATATTTATACATAGAGGAGATGAGACACTGGGTTGCATTTACTGTA 797
Query 779 ACTTACCAAACATGACTCAGATTAGCCCGGAAGAAGGGTTTAAGCTTGTTTACTCAGCTG 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 ACTTACCAAACATGACTCAGATTAGCCCGGAAGAAGGGTTTAAGCTTGTTTACTCAGCTG 857
Query 839 TCTTTAAGTTTATCGATGAGTGTGAGAAGTGTAAGGATA-ATTTGGTGACGGTACTGAGG 897
|| ||| | ||| |||||||||||| ||||||| | | |||| |||||||||||||||
Sbjct 858 TCCTTAGGCAAATCAATGAGTGTGAGATGTGTAAGAA-AGATTTAGTGACGGTACTGAGG 916
Query 898 ACTATTTCACCTGCCCATTTCGAGAATGGGACTTGGGATACCGGAGGAACTTGCAGCAGG 957
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 917 ACTATTTCACCTGCGCATTTCGAGAATGGGACTTGGGACACCGGAGGAACTTGCAGCAGG 976
Query 958 ACGAGTCCTTTTGGAGAAAACCAAATTGACCTGCAGAGCAATGAGATGAAGATCAGGAGA 1017
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 977 ACGAGTCCTTTCGGAGAAAACAAAATTGACCTGCAGAGCAATGAGATGAAGATCAGGAAA 1036
Query 1018 TCTCAGATTGAACAGGTTGAAGGTATAGCAACAAAACGCAA-CAACAAAGCAAAGAAGTT 1076
||||||||||||||| ||||||||||| | ||||||| | ||||||||||||||||||
Sbjct 1037 TCTCAGATTGAACAGCTTGAAGGTATA--A-CAAAACG-AGGCAACAAAGCAAAGAAGTT 1092
Query 1077 TGCGGTTTTGGATGTGACGAGGGTTATGCTGATGAGACCCGATGGGCATCCGAATGGTTA 1136
|||||| ||||||||||| |||||||||| ||||||||| ||||||||||| ||||||||
Sbjct 1093 TGCGGTATTGGATGTGACAAGGGTTATGCAGATGAGACCTGATGGGCATCCCAATGGTTA 1152
Query 1137 CTGGGGAAATAAATGGATGAAAGGTTACAATGATTGCGTGCACTGGTGTTTGCCTGGGCC 1196
||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 1153 CTGGGGAAATAAATGGATGAAAGGTTATAATGATTGCGTGCATTGGTGTTTGCCCGGGCC 1212
Query 1197 AATTGATGCGTGGAATGAGTTTCTAATGGCGATAATTAGACAGTTAAGATGA 1248
||| ||||||||||| || ||| |||||||||||||||||||||||||||||
Sbjct 1213 AATCGATGCGTGGAACGACTTTTTAATGGCGATAATTAGACAGTTAAGATGA 1264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61345065990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5