BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896745
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28270.2 | Symbols: | Protein of unknown function (DUF677) ... 610 7e-174
> AT3G28270.2 | Symbols: | Protein of unknown function (DUF677)
| chr3:10538105-10540024 FORWARD LENGTH=1378
Length=1378
Score = 610 bits (330), Expect = 7e-174
Identities = 541/642 (84%), Gaps = 18/642 (3%)
Strand=Plus/Plus
Query 205 GGAGATCCCTTTAATGGCCAAGTGCTCACGAA-TCAGTTCGAGTTAATCAAAAAGCAGCA 263
|||||||||||| | ||| |||| ||||| || |||||||||| ||||||||||||||
Sbjct 571 GGAGATCCCTTTGACGGCAAAGTTCTCAC-AACTCAGTTCGAGCGGATCAAAAAGCAGCA 629
Query 264 GGAATCCCTTCTGGAGGAAGTGACTCAGACTATG-AAAAAGATTGAGGAGGAAATTACTA 322
|||||||||||||||||||||| | |||||| | ||||||||| |||| ||||||| ||
Sbjct 630 AGAATCCCTTCTGGAGGAAGTGAGTGAGACTA-GAAAAAAGATTCAGGACGAAATTAGTA 688
Query 323 ATCTGA-AGAAAGGAAA-TGTAATTGCGAATATTGTTTTCGGCGCTGTGTTTGCTGTCGT 380
|||| | ||||| ||| | ||||| |||| | ||||||||||||| ||||||| | ||
Sbjct 689 ATCT-AGAGAAA-AAAACTTTAATTACGAACGTGGTTTTCGGCGCTGCGTTTGCTATTGT 746
Query 381 TGCCGTCGCATCGATAGCTCTAATTGTAATATTCCCGGGTACGATTG-CGGCCTATGGGG 439
||| || ||||| ||||||||||||| || | | |||| || || ||| || |||||
Sbjct 747 TGCGGTTGCATCCATAGCTCTAATTGCAACAGGCGTGGGTGCGGCTGCCGG-CTTTGGGG 805
Query 440 CTCTAGCCGCACCACTGGTTGCGTTGGGATGGCCAGTCGTCAACACTATCTTGGGTAAAA 499
||||||||||||||||| ||||| |||||| | | ||| |||||| ||||| |||||
Sbjct 806 CTCTAGCCGCACCACTGCTTGCGGCAGGATGGGCTGGAGTCTACACTACCTTGGATAAAA 865
Query 500 AGATTGATAATCTGAATAAACAGTTGGAAAGTCTGAAGAAAGTAAAAGAGATAGGAA-AA 558
||| ||| |||||| |||||||| ||| |||| |||||||| |||||||| ||| ||
Sbjct 866 AGAAGGATGCTCTGAACAAACAGTTAGAAGGTCTAAAGAAAGTGGAAGAGATA-GAAGAA 924
Query 559 ACGGTGGAGAAGGGTATAAAAACCAACGAAGAAGCGTCAGAGACCGTATCGATTTTAGTC 618
|||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 925 TCGGTGGAGAAAGGTATAAAAACCAACGAAGAAGCGACGGAGACCGTATCGATTTTAGTC 984
Query 619 GACGGGCTAGATGACCGTATCCAAAATATGTTGGAGCTTGTAGATAAGGCTATTGAGAAT 678
||||||||||| ||||||||| ||||||||||| | ||||||||||| |||||||| ||
Sbjct 985 GACGGGCTAGAAGACCGTATCAAAAATATGTTGAAACTTGTAGATAATGCTATTGACCAT 1044
Query 679 GAAGA-AGATGAGGGGGCCACGATACTTGTCATGAAAAT-AG-TCCCTGAGAAAGTTGAG 735
||||| | |||||| |||||||| | ||||| | || | || || | ||||||| |||
Sbjct 1045 GAAGATA-ATGAGGCGGCCACGAGAATTGTCCT--AACTCAGATCAGTAAGAAAGTAGAG 1101
Query 736 AAATTAACAAAGAAAATCAAGGAGGTTGGTGAAAGTGTGGAAGATCATAGCAAATTGGTT 795
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1102 AAATTAACAAAGAAAATCACGGAGGTTGGTGAAAGTGTGGAAGATCATAGCAAGTTGATT 1161
Query 796 GCAGAGGCGAGATTTCACGTTCTGCAAAAGATCAACCGTTAA 837
||| |||| ||| |||| ||||||||||||||||||||||||
Sbjct 1162 GCAAAGGCCAGACTTCAAGTTCTGCAAAAGATCAACCGTTAA 1203
Score = 209 bits (113), Expect = 3e-53
Identities = 165/189 (87%), Gaps = 7/189 (4%)
Strand=Plus/Plus
Query 1 ATGGCGTTATCCGAAGATTTGATGTCGAAATGCTCAG-A-ACA-AATGAGTGCTTATAAA 57
|||||||||||| |||||||||||| ||||||||| | | ||| ||||||||||| |||
Sbjct 79 ATGGCGTTATCCAAAGATTTGATGTTGAAATGCTCGGAAGACATGATGAGTGCTTACAAA 138
Query 58 GCTGCTTGTGAAGAAGACCCAAAACTCAAATCCTTTGATGCTTCGCTTCAGCAGCAAACC 117
|||||||||||||| |||||||||| ||||||||||||||||| |||||||||| ||||
Sbjct 139 TCTGCTTGTGAAGAACACCCAAAACTAAAATCCTTTGATGCTTCCCTTCAGCAGCGAACC 198
Query 118 AACAAAATGATAGACTCACTCACCGTTGAC-ACCGAGACTGGGTCGGTG-TCCCCACACG 175
||||||||||||||||||||||||||||| || ||| ||| ||| | ||||||||||
Sbjct 199 AACAAAATGATAGACTCACTCACCGTTGAAGACA-AGAATGGTTCG-TCCTCCCCACACG 256
Query 176 ATGTACACA 184
| | |||||
Sbjct 257 ACGCACACA 265
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40790127364
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5