BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg896748

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G24550.1 | Symbols: ATPERK1, PERK1 | proline extensin-like r...   241    3e-63
  AT3G24540.1 | Symbols:  | Protein kinase superfamily protein | ...   145    3e-34


> AT3G24550.1 | Symbols: ATPERK1, PERK1 | proline extensin-like 
receptor kinase 1 | chr3:8960258-8963568 FORWARD LENGTH=2377
Length=2377

 Score =  241 bits (130),  Expect = 3e-63
 Identities = 193/221 (87%), Gaps = 13/221 (6%)
 Strand=Plus/Plus

Query  82    GGGAGGCGCCCTGTTGATGCAAACAATGTCTATCATAAGCTATGTGTGATTGATGGTGGA  141
             |||||||||||||||||||| ||||||||||||  | ||  |||   | || |  || | 
Sbjct  1579  GGGAGGCGCCCTGTTGATGCGAACAATGTCTAT-GT-AG--ATGACAGCTT-A--GTTG-  1630

Query  142   AC-AGGCACCG-CC-TTGCTTAACCGAGCATCTGAGGAAGGAG-TTTTCAGGGTTTGGCT  197
             ||  |||| || || |||||||||||||||||||||||||||| |||| |||||||||||
Sbjct  1631  ACTGGGCA-CGACCATTGCTTAACCGAGCATCTGAGGAAGGAGATTTTGAGGGTTTGGCT  1689

Query  198   GAATCAAAGATGGGTAATGAGTATGAAAGAGAGTAAATGGCTCGCATGGTTGCTTGTGCT  257
             || ||||||||||||||||||||||| |||||| | |||||||||||||||||||| |||
Sbjct  1690  GATTCAAAGATGGGTAATGAGTATGACAGAGAGGAGATGGCTCGCATGGTTGCTTGCGCT  1749

Query  258   GCAGCTTGTGTTCGCCATTCAGCTCGCCGCAGACCTCGCAT  298
             || ||||||||||||||||||||||||||||||||||||||
Sbjct  1750  GCGGCTTGTGTTCGCCATTCAGCTCGCCGCAGACCTCGCAT  1790


> AT3G24540.1 | Symbols:  | Protein kinase superfamily protein 
| chr3:8952903-8955621 FORWARD LENGTH=1530
Length=1530

 Score =  145 bits (78),  Expect = 3e-34
 Identities = 188/236 (80%), Gaps = 27/236 (11%)
 Strand=Plus/Plus

Query  74    TAATAATCGGGA-GGCGCCCTGTTGATGCAAACAATGTCTAT-C--AT-A-AGCTATGTG  127
             |||||| ||||| | ||||||||||||||||||||||||||| |  || | |||  | ||
Sbjct  1115  TAATAA-CGGGACGTCGCCCTGTTGATGCAAACAATGTCTATGCGGATGACAGC--T-TG  1170

Query  128   TGATTGATGGTGGAACAGGCACCGCCTTGCTT-AACCGAGCATC-TG-AGGAAGGAGTTT  184
              | |||||  |||  || | | | | ||||||  | | |||| | || || ||| |  ||
Sbjct  1171  -G-TTGAT--TGG-GCACG-A-C-CATTGCTTGTA-CAAGCA-CTTGAAGAAAGTAACTT  1220

Query  185   TCAGGGTTTGGCTGA-ATCAAAGATGGGTAATGAGTATGAAAGAG-AGTAAATGGCTCGC  242
             | | ||||||||||| || |||| ||  |||||||||||| |||| || | |||||||||
Sbjct  1221  TGAAGGTTTGGCTGATAT-AAAGCTGAATAATGAGTATGATAGAGAAG-AGATGGCTCGC  1278

Query  243   ATGGTTGCTTGTGCTGCAGCTTGTGTTCGCCATTCAGCTCGCCGCAGACCTCGCAT  298
             |||||||||||||||||||||||||| ||| || |||||||||| |||||||||||
Sbjct  1279  ATGGTTGCTTGTGCTGCAGCTTGTGTCCGCTATACAGCTCGCCGAAGACCTCGCAT  1334



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13873898724


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5