BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg896754

Length=846
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G28320.1 | Symbols:  | Protein of unknown function (DUF677) ...   455    3e-127
  AT3G28310.1 | Symbols:  | Protein of unknown function (DUF677) ...   248    6e-65 


> AT3G28320.1 | Symbols:  | Protein of unknown function (DUF677) 
| chr3:10581704-10583000 FORWARD LENGTH=1297
Length=1297

 Score =  455 bits (246),  Expect = 3e-127
 Identities = 455/553 (82%), Gaps = 25/553 (5%)
 Strand=Plus/Plus

Query  305   AAAGAATTAGTACTGTAAAGACAGTGACTATAATTTCGCACGTGGTGTTCGGCGCTGTGG  364
             |||||||||||| |||||| |||| ||||||| ||||||||||||| || ||||||| ||
Sbjct  546   AAAGAATTAGTAATGTAAACACAGCGACTATAGTTTCGCACGTGGTTTTTGGCGCTGCGG  605

Query  365   GTGTCATTTACTTTGCCGGATGTATAGGTCTAATGTGTACAGGCGTGGGTGCTCCTCTGG  424
              | ||  ||||   ||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct  606   CTTTCGGTTACGCCGCCGGATGTATAGCTCTAATGTGTACAGGCGTGGGTGCCCCTCTGG  665

Query  425   GGGCTGTAGGGGCGATGGTGGGA--ATAATC-GTGCTTCCGCTAG-GATGGGTGGGCGTC  480
             | ||  |   ||  |||||   |  || | | ||| ||  | | |  ||||||||| |||
Sbjct  666   GCGC--T---GG-AATGGTTACATTATTACCAGTGATTGTGGT-GCAATGGGTGGGTGTC  718

Query  481   AATTATTTCTTGAATGAA-AGGCTT-GAAGCTCTTCAGAAACAGCTAAAAGCTCTGAACA  538
             |||||| |||||||| || | | || |||||||||||||||||||| |||||||||||||
Sbjct  719   AATTATGTCTTGAAT-AACA-GTTTAGAAGCTCTTCAGAAACAGCTTAAAGCTCTGAACA  776

Query  539   TA-GTGAAATCTATACCACCAAA-GATAGGTGAGGGTACAATAA-CCGACCAAGTAGGGA  595
              | |||||| ||||||||  ||| ||||  ||||||||    || ||||| ||| ||| |
Sbjct  777   -AGGTGAAACCTATACCA-GAAAGGATAACTGAGGGTA-TGGAAGCCGACAAAGAAGGTA  833

Query  596   TAAATTCCGTATCTGAACAAGTCGACGAGCTAAAAGATCAGATCAAGTCTATGTTGGAAG  655
             | || |||||| ||||||||||||||||||||||||||||||||  |||| ||||| || 
Sbjct  834   TGAAGTCCGTACCTGAACAAGTCGACGAGCTAAAAGATCAGATCTCGTCTCTGTTGCAAA  893

Query  656   CTGTGGATGATGCTATTGAGAGTAAAGGAGATGAGGTGGACATGAAAGTAGATATGCAAA  715
             |||||||||||||||||| |||| ||||||||||||||||| ||||| |||| ||| |||
Sbjct  894   CTGTGGATGATGCTATTGGGAGTGAAGGAGATGAGGTGGACGTGAAACTAGACATGGAAA  953

Query  716   GCCTCGTGGAGGAAGTGGAGAAATTAACAACGAAAATCAAGGAGATTGGTGATGA-TGTG  774
             |||||| ||| || ||| ||| ||||||||||||||||| |||| || ||||  | ||||
Sbjct  954   GCCTCGAGGATGATGTGAAGACATTAACAACGAAAATCACGGAGGTTTGTGAA-ACTGTG  1012

Query  775   GATGTATATAGCAAA-TTGATCAAAGAGACGAGACTTCACGTTTTGGAAAAGATCAATGG  833
             | |  |||||||||| || ||||||||| ||||||||||||||||||| ||||||| |||
Sbjct  1013  GCTAAATATAGCAAAATT-ATCAAAGAGGCGAGACTTCACGTTTTGGAGAAGATCACTGG  1071

Query  834   TTCTGGAAAATAA  846
             | ||||| |||||
Sbjct  1072  TACTGGATAATAA  1084


 Score =  113 bits (61),  Expect = 2e-24
 Identities = 77/85 (91%), Gaps = 0/85 (0%)
 Strand=Plus/Plus

Query  206  AGTTTAAAGCCATGGGAAATCCTTTTGATGGCAGCGAGCTCACGAATCAGTTCGAGTTGA  265
            |||||||||||||||||||||||||||||| | ||  ||||| || ||||||||||||||
Sbjct  405  AGTTTAAAGCCATGGGAAATCCTTTTGATGACGGCCTGCTCAAGACTCAGTTCGAGTTGA  464

Query  266  TGAACAAGCAGCAGGAATCCCTTTT  290
            ||||||| ||||||||||| |||||
Sbjct  465  TGAACAAACAGCAGGAATCTCTTTT  489


> AT3G28310.1 | Symbols:  | Protein of unknown function (DUF677) 
| chr3:10576961-10577375 FORWARD LENGTH=312
Length=312

 Score =  248 bits (134),  Expect = 6e-65
 Identities = 170/188 (90%), Gaps = 0/188 (0%)
 Strand=Plus/Plus

Query  20   TGGCATTATCCAAAGATAAGATGTCGAGATACTCAGAACAAGTGGATGCTTACAGAGCCG  79
            ||||||| ||||||||||||| |||||| ||||||||||| |||||||||||||||||||
Sbjct  2    TGGCATTCTCCAAAGATAAGACGTCGAGGTACTCAGAACACGTGGATGCTTACAGAGCCG  61

Query  80   CCTGTGGACACCACCCAGAACTCAAATCCTTTGATTCTGCCCTTCAGCAGCGAACaaaaa  139
            ||||||||||||||||||| ||||||||||||||||||    |||||||||||||    |
Sbjct  62   CCTGTGGACACCACCCAGACCTCAAATCCTTTGATTCTAAGATTCAGCAGCGAACCTCCA  121

Query  140  aaaTGATAGACTCGCTCACCGTTGAAGCCAAGACTGGGTCGGTGTCCCCACACACAGTAC  199
            |  ||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||
Sbjct  122  ATCTGATAGACTCGCTCACCGTTGAAGCCAAGACAGGGTCGGTGTCCCCACACGCGGTAC  181

Query  200  ACAAGGAG  207
            ||||||||
Sbjct  182  ACAAGGAG  189



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 41242234687


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5