BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896773
Length=870
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28490.1 | Symbols: | Oxoglutarate/iron-dependent oxygenase... 1227 0.0
AT3G28480.2 | Symbols: | Oxoglutarate/iron-dependent oxygenase... 625 2e-178
AT3G06300.1 | Symbols: AT-P4H-2 | P4H isoform 2 | chr3:1907582-... 95.3 9e-19
> AT3G28490.1 | Symbols: | Oxoglutarate/iron-dependent oxygenase
| chr3:10679049-10680654 REVERSE LENGTH=968
Length=968
Score = 1227 bits (664), Expect = 0.0
Identities = 807/875 (92%), Gaps = 13/875 (1%)
Strand=Plus/Plus
Query 1 ATGGGttctcaaaattttcttgcatttt-ccttctctcttctcttgattttctctcaaat 59
|||| ||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1 ATGGATTCTCAATATTTTCTTGCATTTTCCCTT-TCTCTTCTCTTGATTTTCTCTCAAAT 59
Query 60 ttcatcttcctcctttacttttGATCCAACTAGAGTCACTCAACTCTCCTGGACTCCAAG 119
|||||||| |||||||| | |||||||||||||| ||||||||||||| |||||||| ||
Sbjct 60 TTCATCTTTCTCCTTTAGTGTTGATCCAACTAGAATCACTCAACTCTCTTGGACTCCTAG 119
Query 120 GGCATTTTTATACAATGGGTTTCTCTCTGATGAGGAATGTGATCATTTGATTAACTTGGC 179
||||||||||||||| || |||||||| |||||||||||||||||||||||||| |||||
Sbjct 120 GGCATTTTTATACAAAGGATTTCTCTCAGATGAGGAATGTGATCATTTGATTAAGTTGGC 179
Query 180 AAAAGGAAAGCTTGAGAAGTCAATGGTGGTGGCTGATGATAATTCAGGTGAGAGT-ATAG 238
|||||||||||||||||||||||||||||||||||||| | |||||||||||||| | ||
Sbjct 180 AAAAGGAAAGCTTGAGAAGTCAATGGTGGTGGCTGATGTTGATTCAGGTGAGAGTGA-AG 238
Query 239 ATAGTGAAGAACGCACAAGTTCTGGAGTGTTTCTGACCAAAAGACAGGATGATATAGTAG 298
| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 239 ACAGTGAAGTACGCACAAGTTCTGGAATGTTTCTGACCAAAAGACAGGATGATATAGTAG 298
Query 299 CTAATGTCGAGGCTAAACTTGCTACATGGACCTTTCTTCCCGAGGAAAATGGGGAAGCCT 358
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 299 CTAATGTCGAGGCTAAACTTGCTGCATGGACCTTTCTTCCTGAGGAAAATGGGGAAGCCT 358
Query 359 TACAAATATTGCACTATGAGAATGGTCAAAAATATGATCCACATTTCGACTACTATTACG 418
|||||||| ||||||||||||||||||||||||||||||| ||||||||||| | |||||
Sbjct 359 TACAAATACTGCACTATGAGAATGGTCAAAAATATGATCCGCATTTCGACTATTTTTACG 418
Query 419 ACAAGGAAA-CTCTAAAGCTCGGTGGTCATCGGATCGCCACCGTACTAATGTACTTGTCC 477
|||| |||| ||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 419 ACAA-GAAAGCTCTAGAGCTAGGTGGTCATCGGATCGCCACCGTACTAATGTACTTGTCC 477
Query 478 AATGTCACAAAGGGTGGAGAAACAGTGTTTCCTATGTGGAAGGGTAAAACACCTCAGCTG 537
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 478 AATGTCACAAAGGGTGGAGAAACAGTGTTTCCCAACTGGAAGGGTAAAACACCTCAGCTG 537
Query 538 AAAGACGATA-CTTGGTCGGAATGTGCGAAACAAGGCTATGCAGTGAAACCGAGGAAAGG 596
|||||||||| || ||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 538 AAAGACGATAGCT-GGTCGAAATGTGCAAAACAAGGCTATGCAGTGAAACCGAGGAAAGG 596
Query 597 GGACGCTTTGTTGTTCTTTAATCTTCATCCAAATGCAACCACAGATCCAACTAGCTTACA 656
||||| || |||||||| |||||||||| ||||| ||| || || |||| |||||||||
Sbjct 597 TGACGCATTATTGTTCTTCAATCTTCATCTAAATGGAACAACGGACCCAAATAGCTTACA 656
Query 657 TGGAAGTTGTCCGGTGATTGAGGGAGAGAAATGGTCAGCAACCAGATGGATTCACGTTAG 716
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 657 TGGAAGTTGTCCGGTGATTGAGGGAGAGAAATGGTCAGCAACTAGATGGATTCATGTTAG 716
Query 717 GTCATTTGGTAAGAAGCAATCAGATGGGTGTGTGGACGATCATGAGAGCTGCGAA-ATAT 775
|||||| ||||||||| || | || ||||||||||||||||||||||||| || | ||
Sbjct 717 GTCATTCGGTAAGAAGAAA-CT--TGTGTGTGTGGACGATCATGAGAGCTGCCAAGA-AT 772
Query 776 GGGCAAAGGCAGGGGAATGCGAGAAGAATCCAATGTACATGATGGGTTCAGAAACTGACC 835
||||| | ||||||||||||||||||||||||||||||||| ||||||| |||||| ||
Sbjct 773 GGGCAGATGCAGGGGAATGCGAGAAGAATCCAATGTACATGGTGGGTTCGGAAACTTCCC 832
Query 836 TTGGATATTGTAGAAAGAGTTGCAAAGCTTGTTGA 870
|||||| |||||||||||| |||||||||||||||
Sbjct 833 TTGGATTTTGTAGAAAGAGCTGCAAAGCTTGTTGA 867
> AT3G28480.2 | Symbols: | Oxoglutarate/iron-dependent oxygenase
| chr3:10676041-10678305 REVERSE LENGTH=1243
Length=1243
Score = 625 bits (338), Expect = 2e-178
Identities = 513/595 (86%), Gaps = 22/595 (4%)
Strand=Plus/Plus
Query 286 GATGATATAGT-AGCTAATGTCGAGGCTAAACTTGCTACATGGACCTTTCTTCCCGAGGA 344
||||||||||| || |||||| ||||| ||||||||| | ||||||||||||||||| ||
Sbjct 422 GATGATATAGTAAG-TAATGTGGAGGCAAAACTTGCTGCGTGGACCTTTCTTCCCGAAGA 480
Query 345 AAATGGGGAAGCCTTACAAATATTGCACTATGAGAATGGTCAAAAATATGATCCACATTT 404
||||| ||| || | ||||||||||| ||||||||||||||||| ||||| || |||||
Sbjct 481 GAATGGTGAATCCATGCAAATATTGCATTATGAGAATGGTCAAAAGTATGAACCGCATTT 540
Query 405 CGACTACTATT-ACGACAAGG-AAACTCTAAAGCTCGGTGGTCATCGGATCGCCACCGTA 462
||||||| || ||||| ||| || |||| ||||||||||||||||||| ||||| |||
Sbjct 541 TGACTACT-TTCACGACCAGGCTAA-TCTAGAGCTCGGTGGTCATCGGATTGCCACAGTA 598
Query 463 CTAATGTACTTGTCCAATG-TCACAAAGGGTGGAGAAACAGTGTTTCCTATGTGGAAGGG 521
| |||||||||||||||| | | |||||| ||||||||||||||||| |||||||||||
Sbjct 599 TTGATGTACTTGTCCAATGTTGA-AAAGGGAGGAGAAACAGTGTTTCCCATGTGGAAGGG 657
Query 522 TAAAACACCTCAGCTGAAAGACGATA-CTTGGTCGGAATGTGCGAAACAAGGCTATGCAG 580
|||| || ||||| |||||||||||| | ||| | |||||||| ||||||||||||||||
Sbjct 658 TAAAGCAACTCAGTTGAAAGACGATAGC-TGGACCGAATGTGCAAAACAAGGCTATGCAG 716
Query 581 TGAAACCGAGGAAAGGGGACGCTTTGTTGTTCTTTAATCTTCATCCAAATGCAACCACAG 640
||||||||||||||||||| || || ||||||| |||||||| ||||||||||||||||
Sbjct 717 TGAAACCGAGGAAAGGGGATGCATTACTGTTCTTCAATCTTCACCCAAATGCAACCACAG 776
Query 641 ATCCAACTAGCTTACATGGAAGTTGTCCGGTGATTGAGGGAGAGAAATGGTCAGCAACCA 700
|| ||| ||||||||||||||| ||||| ||| |||||||||||||||||||||||||||
Sbjct 777 ATTCAAATAGCTTACATGGAAGCTGTCCAGTGGTTGAGGGAGAGAAATGGTCAGCAACCA 836
Query 701 GATGGATTCACGTTAGGTCATTTGGTAAGAAGC----AATCAG-A-TG-GG-TGTGTGGA 752
||||||||||||||| |||||| | |||| || ||| || | | || ||| ||||
Sbjct 837 GATGGATTCACGTTAAGTCATTCGA-AAGA-GCGTTTAATAAGCAATCTGGATGTATGGA 894
Query 753 CGATCATGAGAGCTGCGAAATATGGGCAAAGGCAGGGGAATGCGAGAAGAATCCAATGTA 812
||| ||| ||||||||||| |||||||||||||||||||||| |||||||||||| ||
Sbjct 895 CGAGAATGTGAGCTGCGAAAAATGGGCAAAGGCAGGGGAATGCCAGAAGAATCCAACATA 954
Query 813 CATGATGGGTTCAGA-AACTGACCTTGGATATTGTAGAAAGAGTTGCAAAGCTTG 866
|||| | |||||||| || |||| ||||||||| ||||||||||||||||||||
Sbjct 955 CATGGTTGGTTCAGACAAA-GACCATGGATATTGCAGAAAGAGTTGCAAAGCTTG 1008
> AT3G06300.1 | Symbols: AT-P4H-2 | P4H isoform 2 | chr3:1907582-1909804
FORWARD LENGTH=1191
Length=1191
Score = 95.3 bits (51), Expect = 9e-19
Identities = 308/423 (73%), Gaps = 53/423 (13%)
Strand=Plus/Plus
Query 322 ACATGGACCTTTCTTCCC-GAGGAAAATGGGGAAG-CCTTACAAATATTGCA-CTATGAG 378
|||||||| |||| |||| | ||||| ||||||| |||| || ||||| | ||||||
Sbjct 499 ACATGGACATTTC-TCCCAAAAGAAAACGGGGAAGACCTT-CAGGTATTG-AGATATGAG 555
Query 379 AATGGTCAAAAATATGAT-C-CACATTTCGACTACTAT-TACGAC-AAGGAAACTCTAAA 434
| ||||| ||||||||| | ||| ||| ||||||| | ||||| ||| || | |
Sbjct 556 CACGGTCAGAAATATGATGCTCAC-TTT-GACTACT-TCCACGACAAAGTCAA--C-ATT 609
Query 435 GCTC--GGTGGTCATCGGATCGCCACCGTACTAATGTACT-TGTCCAATGTCACAAAGGG 491
|| | ||||| || || || || || || || |||| | |||||||||||||||||||
Sbjct 610 GCCCGTGGTGGACACCGCATAGCAACGGTTCTCTTGTA-TCTGTCCAATGTCACAAAGGG 668
Query 492 TGGAGAAACAGTGTTTCCTATG-TGGA-AGGG-TAAAA-CACC--TCAGCT----GA-AA 540
||||||||| || ||||| | || | ||| | | || || ||| || ||
Sbjct 669 TGGAGAAACTGT-TTTCCCC-GATGCACAGGAATTCTCTCGCCGCTC-GCTTTCTGAGAA 725
Query 541 ----GACGATACTTGGTCGGAATGTGCGAAACAA-GGCTAT-GCAGTGAAACCGAGGAAA 594
|||||| ||| || || ||||| ||| || || || || |||||||||| ||||
Sbjct 726 TAAAGACGAT-CTT--TCTGATTGTGC-AAAGAAAGGA-ATCGCTGTGAAACCGAAGAAA 780
Query 595 GGGGACGCTTTGTTGTTCTTTAATCTTCATCCAA-ATGCAA-CCACAGATCCAACTAGC- 651
||| | ||| |||||||||| || || || | || | |||| || |||| || ||||
Sbjct 781 GGGAATGCTCTGTTGTTCTTCAACCTCCAAC-AAGACGCAATCC-CAGACCCCTTTAGCC 838
Query 652 TTACATGGAAGTTGTCCGGTGATTGAGGGAGAGAAATGGTCAGCAACCA-GATGGATTCA 710
|| || ||| ||||||| ||||| || |||||||||||||| || || | | ||||| ||
Sbjct 839 TT-CACGGAGGTTGTCCAGTGATCGAAGGAGAGAAATGGTCGGCTACTAAG-TGGATCCA 896
Query 711 CGT 713
|||
Sbjct 897 CGT 899
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42447854215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5