BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg896781

Length=189
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G12320.1 | Symbols:  | ankyrin repeat family protein | chr5:...   189    8e-48


> AT5G12320.1 | Symbols:  | ankyrin repeat family protein | chr5:3982684-3984078 
FORWARD LENGTH=692
Length=692

 Score =  189 bits (102),  Expect = 8e-48
 Identities = 128/140 (91%), Gaps = 4/140 (3%)
 Strand=Plus/Plus

Query  19   ACTCCAATGGATGAAGCTATTGGTGCGGAGAAGATGGAGATTATAGATGCTATTAACACA  78
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  412  ACTCCAATGGATGAAGCTATTGGTGCGGAGAAGATGGAGATTATAGATGCTATTAACACA  471

Query  79   ACTGTTGCACAAATGGAACTTGAAAATACCAG-AGTGACACGACTTTTCCAAACATCTCC  137
            |||||||| ||||||||||||||||||||||| | ||||| |||||||| | ||| || |
Sbjct  472  ACTGTTGCCCAAATGGAACTTGAAAATACCAGTA-TGACATGACTTTTC-AGACAACTTC  529

Query  138  CTC-TCGGCATCGTAAATGT  156
             || || ||||| |||||||
Sbjct  530  ATCCTCAGCATCCTAAATGT  549



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8350024266


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5