BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896803
Length=1191
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28720.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1807 0.0
> AT3G28720.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 25
plant structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58100.1);
Has 1610 Blast hits to 344 proteins in 85 species:
Archae - 0; Bacteria - 567; Metazoa - 95; Fungi - 71;
Plants - 145; Viruses - 0; Other Eukaryotes - 732 (source:
NCBI BLink). | chr3:10782276-10784447 FORWARD LENGTH=2172
Length=2172
Score = 1807 bits (978), Expect = 0.0
Identities = 1096/1154 (95%), Gaps = 4/1154 (0%)
Strand=Plus/Plus
Query 40 TTGCGAATTCCTGTGTACTTTGAGGATACGTTGGTGGTTCAGTTGATTCATGTGTATGGG 99
||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 913 TTGAGAATCCCTGTGTACTTTGAGGATACGTTGGTGGTTCAGTTTATTCATGTGTATGGG 972
Query 100 TCGGAGGTTAAGGATTCGACTGGGTTAGATTGGGAGTTTGTGAAGAGAACGTTTATGGAT 159
|| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 973 TCAGAGGTTAAGGATTCGAGTGGGTTAGATTTGGAGTTTGTGAAGAGAACGTTTATGGAT 1032
Query 160 GAAGCTGAGAATGGTGGGTTGTTGTTAGGAGAACAGAAGTTGAGTTTTAAGAGTTATAGT 219
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1033 GAAGCTGAGAGTGGTGGGTTGTTGTTAGGTGAACAGAAGTTGAGTTTTAAGAGTTATAGT 1092
Query 220 GTGAATTATAGAGAATGTCCGATTTGTTCGTTTGCGGTATCTCGTGGGATGAATTCGTAT 279
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 GTGAATTATAGAGAATGTTCGATTTGTTCGTTTGCGGTATCTCGTGGGATGAATTCGTAT 1152
Query 280 ACGTCTAGGTTTTTGTTTGATAACTATACTTTGATTGTGAGTGAGTATTTGGATTCCAAG 339
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1153 ACTTCTAGGTTTTTGTTTGATAACTATACTTTGATTGTGAGTGAGTATTTGGATTCTAAG 1212
Query 340 CATATGCATCGGGCTTTGACTGATTCAGCTGAGGAGTTGAGGAGAGTTGCGGGGATTGTT 399
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1213 CATATGCATCGGGCGTTGACTGATTCGGCTGAGGAGTTGAGGAGAGTTGCGGGGATTGTT 1272
Query 400 GAAGAAGAAGGAAATGAGTTTGCTAGGGTTTTACCTGTTTATGTGTTTGATTTGGATATC 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1273 GAAGAAGAAGGAAATGAGTTTGCTAGGGTTTTACCTGTTTATGTGTTTGATTTGGATATC 1332
Query 460 AATACGCCTTTGTTGCTTGATCGGTATCATCAGTCTGTTGCTTTTAGAGATATGGTTATT 519
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1333 AATACGCCTTTGTTGCTTGATCGGTATCATCAGTCTGTTGCTTTTAGAGATATGGTGATT 1392
Query 520 GCTGTTAGAACTAGAGGAACTCAAACTGTGAGTGATTATACTTGCAATGGGCGTCATGTG 579
|||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 1393 GCTGTTAGAACTAGAGGAACTCAAACGGTTAGTGATTATACTTGCAACGGGCGTCATGTG 1452
Query 580 TTTGTTCATACGAGAGACTTAGAACGACCTCTGGTTGGTTCCATTTTACAGAGTATGTGG 639
|||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||
Sbjct 1453 TTTGTTCATACGAGAGACTTAGAACGACCTCTCGTTGGTTCCATTCTGCAGAGTATGTGG 1512
Query 640 GGTGTGTCTTCTACTCATTTGACTTGGAGCCCGAGACATAACACAACTCTAGTTGATTAC 699
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1513 GGTGTATCTTCTACTCATTTGACATGGAGCCCGAGACATAACACAACTCTAGTTGATTAT 1572
Query 700 ACATGGAGCATTGGGCAAACACCGTTTGGACCTTTCTCTGATATATCGTCTCTGTCGTTT 759
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 1573 ACATGGAGCATTGGGCAAACACCGTTTGGACCATTCTCTGATATCTCGTCTCTATCGTTT 1632
Query 760 GTTCAGAAAGACGCTGCTAAGAGAAACGTGCTGTTGACATCATTGAACACAACTATCACA 819
||||||||||| |||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct 1633 GTTCAGAAAGATGCTGCTAAGAGAAACGTGATTTTGACATCTTTGAACACAACTATCACA 1692
Query 820 AGTGCAATCGATGTTATTGATTCCGCGGTTGCTTATGGAGGAGATGTGATCCTACGGAAA 879
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1693 AGTGCAATCGATGTTATCGATTCCGCGGTTGCATATGGAGGAGATGTGATCCTACGGAAA 1752
Query 880 CAGAATCGACACTCTGAGTTTATGCAAAGGTGGAATCTTTTGCAGTACAAACTGGATAAA 939
|||||||| ||||||||||| |||||||||||||||||| |||||||||| |||||||||
Sbjct 1753 CAGAATCGCCACTCTGAGTTCATGCAAAGGTGGAATCTTATGCAGTACAAGCTGGATAAA 1812
Query 940 ACGGTTTCTGCTCTATCACACAATGAGTTCGAGATGGCTTTGTACTACCTGAGATCAGCA 999
||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||
Sbjct 1813 ACGGTTTCTGCTCTATCACACAATGAGTTCGAGATGGCTTTGTTCTACTTAAGATCAGCT 1872
Query 1000 GCGCACGACTTGTACTCAGTCCACTCAGTGGTGTACCTCGCATCACAACAGGTGGAAGCG 1059
| ||||||||||||||||| || ||||| ||||||||||| ||||||| ||| ||||||
Sbjct 1873 TCACACGACTTGTACTCAGTGCATTCAGTAGTGTACCTCGCGTCACAACGGGTAGAAGCG 1932
Query 1060 AGTCTGAACTGTTTCAAAGATCCTCCGTTCCCATGGGGAACTGTTTCAGTGTCGGGATTC 1119
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1933 AGTCTCAACTGTTTCAAAGATCCACCGTTCCCATGGGGAACTGTTTCAGTGTCGGGATTC 1992
Query 1120 GGGTTAATGGCT-TTGGGTTACGTGTACTCAAAAAGAGATAGACTCTTCAG-AAGCAAAA 1177
|||||||||||| |||| |||||||| ||| ||||||||||||||||| || || ||||
Sbjct 1993 GGGTTAATGGCTGTTGG-TTACGTGTTCTCGAAAAGAGATAGACTCTTTAGGAA-CAAAC 2050
Query 1178 GAAAACAGTTCTGA 1191
||||||||||||||
Sbjct 2051 GAAAACAGTTCTGA 2064
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58483634925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5