BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896827
Length=666
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28945.1 | Symbols: | transposable element gene | chr3:1097... 108 8e-23
AT3G27883.1 | Symbols: | transposable element gene | chr3:1033... 102 4e-21
> AT3G28945.1 | Symbols: | transposable element gene | chr3:10970273-10975947
REVERSE LENGTH=5675
Length=5675
Score = 108 bits (58), Expect = 8e-23
Identities = 62/64 (97%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 196 GGAGGAAGCAAAAGAAAAGCTACTGATGAGGGTGAAGTTCCATCCAAAGTTGCAAAGTGC 255
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1447 GGAGGAGGCAAAAGAAAAGCTACTGATGAGGCTGAAGTTCCATCCAAAGTTGCAAAGTGC 1506
Query 256 AACA 259
||||
Sbjct 1507 AACA 1510
> AT3G27883.1 | Symbols: | transposable element gene | chr3:10339967-10345348
FORWARD LENGTH=5382
Length=5382
Score = 102 bits (55), Expect = 4e-21
Identities = 59/61 (97%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 196 GGAGGAAGCAAAAGAAAAGCTACTGATGAGGGTGAAGTTCCATCCAAAGTTGCAAAGTGC 255
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1327 GGAGGAGGCAAAAGAAAAGCTACTGATGAGGCTGAAGTTCCATCCAAAGTTGCAAAGTGC 1386
Query 256 A 256
|
Sbjct 1387 A 1387
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32200088227
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5