BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896836
Length=510
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28930.1 | Symbols: AIG2 | AIG2-like (avirulence induced gen... 784 0.0
AT3G28940.1 | Symbols: | AIG2-like (avirulence induced gene) f... 721 0.0
AT3G28950.1 | Symbols: | AIG2-like (avirulence induced gene) f... 137 8e-32
AT4G31310.1 | Symbols: | AIG2-like (avirulence induced gene) f... 115 4e-25
> AT3G28930.1 | Symbols: AIG2 | AIG2-like (avirulence induced gene)
family protein | chr3:10959686-10960808 REVERSE LENGTH=797
Length=797
Score = 784 bits (424), Expect = 0.0
Identities = 484/513 (94%), Gaps = 3/513 (1%)
Strand=Plus/Plus
Query 1 ATGACTAGCTCCGATCAATCTCCATCGCACAACGTCTTCGTCTACGGCAGTTTCCAAGAA 60
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 81 ATGACAAGCTCCGATCAATCTCCATCGCACGACGTCTTCGTCTACGGCAGTTTCCAAGAA 140
Query 61 CCAGCCGTCGTCAAATTGATCCTCGAATGTGTTCCGGTCATGGTTTCCGCTCAACTCCAC 120
|||||||| || || || || |||||||||| ||||||||||||||||||||||||||||
Sbjct 141 CCAGCCGTTGTTAATTTAATTCTCGAATGTGCTCCGGTCATGGTTTCCGCTCAACTCCAC 200
Query 121 GGCTATCACTTGTATAGACTTAAAGGTCGTTTGCATCCATGTATCTCTCCTTCTGAGAAT 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 201 GGCTATCACTTGTATAGACTTAAAGGTCGTTTGCATCCATGTATTTCTCCTTCCGACAAT 260
Query 181 GGACTCATCAACGGCAAGATACTAAGTGGATTAACAGATTCTCAGTTAGAGAGTTTAGAT 240
||| | ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 261 GGATTAATCAATGGCAAGATACTAACTGGATTAACAGATTCTCAGTTAGAGAGTTTAGAT 320
Query 241 ATGATTGAAGGAACTGAATATGTCAGGAAGACTGTTGAAGTTGTTTTGACTGATACTTTG 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 321 ATGATTGAAGGAACTGAATATGTGAGGAAGACTGTTGAAGTTGTTTTGACTGATACTTTG 380
Query 301 GAGAAGAAGCAAGTTGAAACAATTGTATGGGCAAACAAGGATGATCCTAATATGTATGGA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 GAGAAGAAGCAAGTTGAAACAATTGTATGGGCAAACAAGGATGATCCTAATATGTATGGA 440
Query 361 GAATGGGATTTCGAGGAATGGAAGAGGCTTCATATGGAGAAATTCATAGAGGCGTCGACG 420
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 441 GAATGGGATTTCGAGGAATGGAAGAGGCTTCATATGGAGAAATTTATAGAGGCGGCGACG 500
Query 421 AAGTTCATGGAGTGGAAGAAGAATCCGGATGGGAGAAGTAGGGAAGAGTTTGAGAAGTTT 480
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 501 AAATTCATGGAGTGGAAGAAGAATCCGAATGGGAGAAGTAGGGAAGAGTTTGAGAAGTTT 560
Query 481 GTATTCGATGATCCT-C-CCG-CTGCGGCGTGA 510
||| |||||| || | ||| || |||| |||
Sbjct 561 GTACAAGATGATTCTTCTCCGGCTTCGGCTTGA 593
> AT3G28940.1 | Symbols: | AIG2-like (avirulence induced gene)
family protein | chr3:10968100-10969387 REVERSE LENGTH=810
Length=810
Score = 721 bits (390), Expect = 0.0
Identities = 474/514 (92%), Gaps = 8/514 (2%)
Strand=Plus/Plus
Query 1 ATGACTAGCTCCGATCAATCTCCATCGCACAACGTCTTCGTCTACGGCAGTTTCCAAGAA 60
||||| ||||||||| |||||| |||||| |||| ||||||||||||||||||||||||
Sbjct 77 ATGACAAGCTCCGATAAATCTCTGTCGCACGACGTTTTCGTCTACGGCAGTTTCCAAGAA 136
Query 61 CCAGCCGTCGTCAAAT-TGATCCTCGAATGTGT-TCCGGTCATGGTTTCCGCTCAACTCC 118
||| |||||||| ||| |||||||||||||| | ||||||||||||| ||||||||||||
Sbjct 137 CCATCCGTCGTC-AATCTGATCCTCGAATGT-TCTCCGGTCATGGTTCCCGCTCAACTCC 194
Query 119 ACGGCTATCACTTGTATAGACTTAAAGGTCGTTTGCATCCATGTATCTCTCCTTCTGAGA 178
||||||||||| | |||||||| |||||||| || ||| |||||||||||||||||||||
Sbjct 195 ACGGCTATCACGTATATAGACTCAAAGGTCGCTTACATGCATGTATCTCTCCTTCTGAGA 254
Query 179 ATGGACTCATCAACGGCAAGATACTAAGTGGATTAACAGATTCTCAGTTAGAGAGTTTAG 238
||||||| ||||||||||||||||||| ||| |||||||||||||||||||||| |||||
Sbjct 255 ATGGACTAATCAACGGCAAGATACTAACTGGGTTAACAGATTCTCAGTTAGAGAATTTAG 314
Query 239 ATATGATTGAAGGAACTGAATATGTCAGGAAGACTGTTGAAGTTGTTTTGACTGATACTT 298
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 315 ATATGATTGAAGGAAGTGAATATGTGAGGAAGACTGTTGAAGTTGTTTTGACTGATACTT 374
Query 299 TGGAGAAGAAGCAAGTTGA-AACAATTGTATGGGCAAACAAGGATGATCCTAATATGTAT 357
|||||||||||||||||| | | | |||||||||||||||||||||||||||| |||||
Sbjct 375 CGGAGAAGAAGCAAGTTGAGACCTA-TGTATGGGCAAACAAGGATGATCCTAATTTGTAT 433
Query 358 GGAGAATGGGATTTCGAGGAATGGAAGA-GGCTTCATATGGAGAAATTCATAGAGGCGTC 416
|||||||||||||| ||||||||| ||| ||||||| ||||| |||||||| ||||||||
Sbjct 434 GGAGAATGGGATTTTGAGGAATGG-AGACGGCTTCACATGGATAAATTCATCGAGGCGTC 492
Query 417 GACGAAGTTCATGGAGTGGAAGAAGAATCCGGATGGGAGAAGTAGGGAAGAGTTTGAGAA 476
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 GACGAAATTCATCGAGTGGAAGAAGAATCCGGATGGGAGAAGTAGGGAAGAGTTTGAGAA 552
Query 477 GTTTGTATTCGATGATCCTCCCGCTGCGGCGTGA 510
|||||||||||||||||||||| ||||||| |||
Sbjct 553 GTTTGTATTCGATGATCCTCCCACTGCGGCTTGA 586
> AT3G28950.1 | Symbols: | AIG2-like (avirulence induced gene)
family protein | chr3:10976108-10977492 REVERSE LENGTH=871
Length=871
Score = 137 bits (74), Expect = 8e-32
Identities = 346/472 (73%), Gaps = 39/472 (8%)
Strand=Plus/Plus
Query 1 ATGACTAGCTCCGATCAATCTCCATCGCACAACGTCTTCGTCTACGGCAG-TTTCCAAGA 59
||||| ||||| |||| ||| ||| |||||||||||||||||||| || || | |||
Sbjct 123 ATGACCAGCTCTGATC---CTCAATCTCACAACGTCTTCGTCTACGGTAGCATT-CTAGA 178
Query 60 ACCAGCCGTCGTCAAATTGATCCTCGAAT-G-TGTTCCGGTCATGGTTTCCGCTC-AACT 116
||| ||||||| | ||||||| | || | ||| | | || |||| | ||
Sbjct 179 ACCCGCCGTCGCCGCCGTGATCCT-GGATCGCACAGCCGAT-ACAGTCCCCGC-CGTTCT 235
Query 117 CCACGGCTATCACTTG-TATAGACTTAAAGGTCGTTTGC--ATCCATGTA-TCTCTCCTT 172
||| ||||||||| | |||| ||| ||||| | || | ||||||||| | | | |||
Sbjct 236 CCATGGCTATCAC-AGATATAAACTCAAAGGAC--TTCCATATCCATGTATTGT-TTCTT 291
Query 173 CTGAGAATGGACTCA-TCAACGGCAA-GATACTAAGTGGATTAACAGATTCTCAGTTAGA 230
|||| |||| | ||||||| || | || ||| |||| | | ||| || ||||| |
Sbjct 292 CTGATTCTGGA-AAAGTCAACGGAAAGGTTA-TAACTGGAGTGTCTGATGCTGAGTTAAA 349
Query 231 GAGTTTAGATATGATTGAAGG-AACTGAATATGTCAG-GAAGACTGTTGAAGTTGTTTTG 288
| ||| ||| |||||||||| || ||| |||| || | | ||||||||||||| | |
Sbjct 350 TAATTTCGATGTGATTGAAGGTAA-TGATTATGAGAGAGTA-ACTGTTGAAGTTG-TAAG 406
Query 289 ACT-GATACTT-TGGAGAAGAAGCAAGTTGAAACAAT-TGTATGGGCAAACAAGGATGAT 345
| | |||| || | |||||| | |||||||||| | ||| |||| || || ||||||
Sbjct 407 AATGGATAATTCT-GAGAAGGTGAAAGTTGAAAC-TTATGTTTGGGTTAATAAAGATGAT 464
Query 346 CCTA-ATATGTATGGAGAATGGGATTTCGAGGAATGGA-AGAGGCTTCATATGGAGAAAT 403
|||| | ||||||||||||||||||||||||||||||| || || |||| ||||||||
Sbjct 465 CCTAGA-ATGTATGGAGAATGGGATTTCGAGGAATGGAGAGTGG-TTCACGCGGAGAAAT 522
Query 404 TCATAGAGGCGTCGACGAAGT-TCATGGAGTGGAAGAAGAATCCGGATGGGA 454
|| | ||| | | | ||| | |||| ||||| |||||||| ||||||
Sbjct 523 TCGTGGAGACTTTTA-GAAAAATGTTGGAATGGAACAAGAATCCAAATGGGA 573
> AT4G31310.1 | Symbols: | AIG2-like (avirulence induced gene)
family protein | chr4:15191325-15192596 FORWARD LENGTH=778
Length=778
Score = 115 bits (62), Expect = 4e-25
Identities = 108/130 (83%), Gaps = 4/130 (3%)
Strand=Plus/Plus
Query 255 TGAATATGTCAGGAAGACTGTTGAAGTTGTTTTGACTGATACTTTGGAGAAGAAGCAAGT 314
|||||||| ||| |||||||||||||| | |||| ||||||| |||||| ||||||
Sbjct 249 TGAATATGACAGAAAGACTGTTGAAGTAATGCTGACGGATACTTCAGAGAAGCTGCAAGT 308
Query 315 TGAAACAAT-TGTATGGGCA-AACAAGGATGATCCTAATATGTATGGAGAATGGGATTTC 372
||||| || ||||| || | ||||| |||||||| || | ||||||||||||||||||
Sbjct 309 CGAAAC-ATATGTAT-GGAAGAACAAAGATGATCCGGATCTTTATGGAGAATGGGATTTC 366
Query 373 GAGGAATGGA 382
||||||||||
Sbjct 367 GAGGAATGGA 376
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24363561295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5