BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896848
Length=789
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29010.1 | Symbols: | Biotin/lipoate A/B protein ligase fam... 1192 0.0
> AT3G29010.1 | Symbols: | Biotin/lipoate A/B protein ligase family
| chr3:11006753-11007977 FORWARD LENGTH=812
Length=812
Score = 1192 bits (645), Expect = 0.0
Identities = 743/791 (94%), Gaps = 4/791 (1%)
Strand=Plus/Plus
Query 1 ATGAGTTTAAGTAGAGTCAAA-GATTTGAGGCTTCCATTGATGAATCTGGTTAGACTTAA 59
|||||||||||||||| |||| |||||||| ||||| ||||||||| |||||||||||||
Sbjct 24 ATGAGTTTAAGTAGAG-CAAAGGATTTGAGACTTCCGTTGATGAATTTGGTTAGACTTAA 82
Query 60 AGGAACACCGATTCTGGAGCAACTTCATTTAGAAGAAAGGCTTCTTAGAACATCTTCTGA 119
||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 83 AGGTACACCAATTTTGGAGCAACTTCATTTAGAAGAAAGGCTTCTTAGAACATCTTCTGA 142
Query 120 TAATTGGTGCATTGTTAATGATGGAACCAATGTTCCTACCATTGTCATGGGAATGTCAGG 179
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 143 TAATTGGTGCATTGTTAATGATGGAACCAATGTTCCTACCATTGTGATGGGAATGTCAGG 202
Query 180 GAAGCCTTCTCAGCTTCTTGAGGTTGGACCTGTTATGGAAGATCGAATACCGGTGATTAA 239
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 203 GAAGCCTTCTCAGCTTCTTGAGGTTGGACCAGTTATGGAAGATCGAATACCGGTGATTAA 262
Query 240 AAGATTTACGGGAGGAGGGACTGTGATTGTTGATAAGAGTACTTTGTTTGTGAGTTTGAT 299
| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 263 ACGATTTACGGGAGGAGGAACTGTGATTGTGGATAAGAGTACTTTGTTTGTGAGTTTGAT 322
Query 300 TTGTAACAAGGATGATGTACCAAATGTCCAGCCTTATCCTCGTTCTGTTATGGCGTGGAG 359
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 323 TTGTAACAAGGATGATGTACCAAATGTTCAGCCTTATCCTCGTTCTGTTATGGCTTGGAG 382
Query 360 CGGTTCGTTGTATGGTGAAGTGTTTAAGGGTGTTAATGGTTTCCAACTACGTGAGAACGA 419
||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 383 TGGTTCGTTGTATGATGAAGTGTTTAAGAGTGTTAATGGTTTCCAACTACGTGAGAATGA 442
Query 420 TTATGTTTTTGGTGATCGTAAGTTTGGTGGGAATGCTCAATCGATAATTAAGAATAGATG 479
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 443 TTATGTGTTTGGTGATCGTAAGTTCGGTGGGAATGCTCAATCGATAATTAAGAATAGATG 502
Query 480 GATACACCATACGTCATTTCTATGGGACTACGATGTGAGAAACATGGCTTACCTTAAACT 539
||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 503 GATTCACCATACTTCATTTCTATGGGACTATGATGTGAGAAACATGGCTTACCTTAAGCT 562
Query 540 GCCTTCGAGAGTGCCTCAATACCGGTTGGAAAGAGATCACACAGAATTCGTGTGTAGAAT 599
||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 563 GCCTTCGAGAGTGCCACAGTACCGGTTGGAAAGAGATCACACAGATTTCGTGTGTAGAAT 622
Query 600 GAAGGAGTACATTGAAAGATCGGATTTTATTGAGAAGACAGTAAAGGCTGTG-GGAAACC 658
|||||| |||||||||||||| |||||| |||||||||||||||| ||||| |||| ||
Sbjct 623 GAAGGATTACATTGAAAGATCAGATTTTGTTGAGAAGACAGTAAAAGCTGTAAGGAA-CC 681
Query 659 AATTCTCATTGAAGCAAGTGAACCTTGAGGATATCGATTCCTATGCAAAAGGCGGATATT 718
||||| |||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||
Sbjct 682 AATTCACATTGAAGCAAGTGAACCTTGAAGATATTGATTCCTATGCGAAAGGAGGATATT 741
Query 719 TGAAGACCACGAGGCTTCTTACAATGGAAGAAATCGAAGAAGCAATGGCTGGTACAACTC 778
||||||| |||||||||||||| ||||||||| |||||||||||||||||| ||| | ||
Sbjct 742 TGAAGACTACGAGGCTTCTTACGATGGAAGAACTCGAAGAAGCAATGGCTGATACCATTC 801
Query 779 AGAACGCATGA 789
| ||| |||||
Sbjct 802 AAAACACATGA 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38378888308
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5