BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg896853 Length=765 Score E Sequences producing significant alignments: (Bits) Value AT3G29040.1 | Symbols: | Domain of unknown function (DUF26) | ... 1033 0.0 AT3G21970.1 | Symbols: | Domain of unknown function (DUF26) | ... 662 0.0 > AT3G29040.1 | Symbols: | Domain of unknown function (DUF26) | chr3:11037461-11038440 FORWARD LENGTH=768 Length=768 Score = 1033 bits (559), Expect = 0.0 Identities = 703/772 (91%), Gaps = 11/772 (1%) Strand=Plus/Plus Query 1 ATGTTTTCAAATATATTGGCCGTGGTGGCTATACAA---CTCCTTATACGCAGCGTTTCT 57 |||| |||||||||||||||| ||||||| || ||| ||||||||||||| |||||| Sbjct 1 ATGTCTTCAAATATATTGGCCATGGTGGCCATGCAACTCCTCCTTATACGCATAGTTTCT 60 Query 58 TCTCAGAACGTTACCAATGAGTATTTGAACCACCAATGCAACAACACCCAAGGGACCTAC 117 || || |||||||| |||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 61 TCCCAAAACGTTACGAATGAGTATTTGAACCACCAATGCAACAACACACAAGGGACATAC 120 Query 118 ACGCGGGGGAGTACGTTTGAGAAGAATCTCAACCAAGTCATCCATAACATCTCCCACCTT 177 |||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 121 ACGCGGGGTAGTACGTTTGAGAAGAATCTCAACCAAGTCATCCGTAACATCTCTCACCTC 180 Query 178 CATCTTCGCAACGGTTACACCTACGAA-TCCAATGTTGTGGCTTATGAAGTTAGTAAGGA 236 ||||||||| |||||||||||||| || |||||||||| |||||| ||||||||||| || Sbjct 181 CATCTTCGCTACGGTTACACCTAC-AACTCCAATGTTGAGGCTTACGAAGTTAGTAAAGA 239 Query 237 TCCCAACATTGTCTTCGTTTTGCTCCAGTGCCGTGGTGACTCGTACGGGTCTAAGTGCCA 296 |||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| Sbjct 240 TCCCAACATTGTCTTCGTTTTGCTCCAGTGTCGTGGTGACTCTTACGGGTCCAAGTGCCA 299 Query 297 CTCCTGCCTCCATACAGCCCTCTCTGGGCTTCGTGAGAGATGTCCGGGAAACAGAGGAGC 356 |||||||||||| |||||| |||||||||||||||||||||||| |||||||| |||||| Sbjct 300 CTCCTGCCTCCACACAGCCTTCTCTGGGCTTCGTGAGAGATGTCGGGGAAACAAAGGAGC 359 Query 357 AATAATATGGTACGACCAGTGTGTTTTGGAGATTTCTTCAATTAATACCAAGGGGAGGAT 416 |||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||| Sbjct 360 AATAATATGGTACGACCAATGTGTTTTGGAGATTTCTTCCGTGAATACCAAGGGGAGGAT 419 Query 417 TCGTTACGATAGTTTTTTCAATATGACCAACCTGAAGAATGTGAGTAGCGATGCGGAGCA 476 ||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||| Sbjct 420 TCGTTACGATAGTTTTTTCAATATGACCAACGTGAAGAATGTGAGCAGCAATGCGGAGCA 479 Query 477 GTTTAAAAATAAAAGGAAAGATCTCTTCAACAAGCTATTGGTAAAAGCCACTAAGGATGT 536 |||||||||||||||||| ||||||||| ||||||||||| | |||||| |||||||| Sbjct 480 GTTTAAAAATAAAAGGAAGGATCTCTTCCACAAGCTATTGTTGGGAGCCACCAAGGATGT 539 Query 537 AAGCGAAAAG-AATGGTTG-GTACGCAGTGGGTGAGACGAGGATAGGGAGAAATAAGTTG 594 |||||| | | |||| | | |||||||||||| |||||||||||||| ||||||||| || Sbjct 540 AAGCGACA-GCAATGAT-GCGTACGCAGTGGGGGAGACGAGGATAGGAAGAAATAAGATG 597 Query 595 TATGCAATGATGCAGTGTGCGCTAGACTTAACGCCGAACGGTTGCTATGTGTGTCTAGAA 654 |||||||||||||||||||| |||||||||||| |||| || |||||||||||||||||| Sbjct 598 TATGCAATGATGCAGTGTGCACTAGACTTAACGACGAATGGATGCTATGTGTGTCTAGAA 657 Query 655 TGGATTACCGGTAGGTATGATAG-TTACTACTTCGACCGTAGACAAGGAGGGAGAGTTTT 713 ||||||| || ||||||||||| || |||||| ||||||||||||||| ||||||||| Sbjct 658 TGGATTATAGGCAGGTATGATAGCTT-CTACTTTGACCGTAGACAAGGAACGAGAGTTTT 716 Query 714 GGGTAGGAGTTGTAGCTTAAGGTATGAGCTTTACCCTTTTCTTAGAAGGTAA 765 | ||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 717 GAGTAGGAGTTGTAGCTTAAGATATGAGCTTTACCCTTTTCTTAGGAGGTAA 768 > AT3G21970.1 | Symbols: | Domain of unknown function (DUF26) | chr3:7742459-7743601 FORWARD LENGTH=916 Length=916 Score = 662 bits (358), Expect = 0.0 Identities = 646/780 (83%), Gaps = 40/780 (5%) Strand=Plus/Plus Query 12 TATATTGGCCGTGGTGGCTATACAAC-TC--CTTATACGCAGCGTTTCTTCTCAGAACGT 68 ||| |||| ||||||||||||||||| || ||| ||| || |||||||| |||||||| Sbjct 30 TATTTTGGTCGTGGTGGCTATACAACTTCTTCTTGTACACAATGTTTCTTCCCAGAACGT 89 Query 69 TACCAATGAGTATTTGAACCACCAATGCAACAACACCCAAGGGACCTACACGCGGGGGAG 128 ||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||| Sbjct 90 TACCAATGACTATTTGAACCACCAATGCAACAACACCCAAGGGAGATACACGCATGGGAG 149 Query 129 TACGTTTGAGAAGAATCTCAACCAAG-TCATCCATAACATCTCCCACCTTC-ATCTTCGC 186 ||||||||||||||| |||||||||| || | ||||||||||| ||| || ||||| | Sbjct 150 TACGTTTGAGAAGAACCTCAACCAAGTTC-TTCATAACATCTCTAACC-TCGATCTTAG- 206 Query 187 A-ACGGTTACACCTACGAATCCAATGTTGTGGCTTATGAAGTTAGTAAGGATCCCAACAT 245 | |||||||| |||||| || |||||||||||||| ||||||| |||||||||||||| Sbjct 207 ATACGGTTACGCCTACGTCTCTAATGTTGTGGCTTACAAAGTTAGCAAGGATCCCAACAT 266 Query 246 TGTCTTCGTTTTGCTCCAGTGCCGTGGTGACTCGTACGGGTCTAAGTGCCACTCCTGCCT 305 |||||||||||||||||||||||| |||||||| | ||||| || |||||||||||||| Sbjct 267 TGTCTTCGTTTTGCTCCAGTGCCGCGGTGACTCCTTTGGGTCCAAATGCCACTCCTGCCT 326 Query 306 CCAT-ACAGCCCTCTCTGGGCTTCGTGAGAGATGTCCGGGAAACAGAGGAGCAATAATAT 364 | | |||||| ||||||||||||||||||||||||| |||||||||||||||| ||||| Sbjct 327 C-AGCACAGCCGTCTCTGGGCTTCGTGAGAGATGTCCAGGAAACAGAGGAGCAACAATAT 385 Query 365 GGTACGACCAGTGTGTTTTGGAGATTTCTTCAATTAATACCAAGGGGAGGATTCGTTACG 424 |||||||||| ||| |||||||||||||||| | || || |||||||||| | |||| Sbjct 386 GGTACGACCAATGTCTTTTGGAGATTTCTTCGGTGGATTCCGAGGGGAGGATCCATTACA 445 Query 425 ATA-GTTTTTTCAATATGACCAA-CCTGAAGAATGTGAGTAGCGATGCGGAGCAGTTTAA 482 | | || | ||| ||||| | || || || ||| || | | |||| | | | ||| | Sbjct 446 A-ACGTATGTTCTATATG-CAAAACCCGACGAACGTCACCAACGATCCCAAACGGTTCGA 503 Query 483 AAATAAAAGGAAAG-ATCTCTTCAACAAGCTATTGGTAAAAGCCACTAAGGAT-GTAAGC 540 | ||||||| || | ||||| || |||||||| || | ||||||| |||||| | ||| Sbjct 504 AGATAAAAG-AAGGGATCTCCTCCACAAGCTAATGCTGGAAGCCACCAAGGATAGCAAG- 561 Query 541 GAAAA-G-----AATGGT-TG--GTACGCAGTGGGTGAGACGAGGATAGGGAGAAATAAG 591 ||||| | || || || ||||||||||||||||| |||||| || ||||||||| Sbjct 562 GAAAACGGCGCCAAGGGACTGTTGTACGCAGTGGGTGAGATGAGGATTGGAAGAAATAAG 621 Query 592 TTGTATGCAATGATGCAGTGTGCGCTAGACTTAACGCCGAAC-GGTTGCTATGTGTGTCT 650 ||||||||||| |||||||| ||| ||||||| || || | |||||| |||||||||| Sbjct 622 ATGTATGCAATGGTGCAGTGTACGCAAGACTTATGGCAGA-CTGGTTGCCATGTGTGTCT 680 Query 651 AGAATGGATTAC-CGG-T-AGGTATG-ATAGTTACTACTTCGACCGTAGACAAGGAGGGA 706 |||||||||||| | | | | |||| | |||| || || |||||| || |||||||| Sbjct 681 AGAATGGATTACGCAGATGAAATATGGAGAGTT-CTTCT---ACCGTAAACCAGGAGGGA 736 Query 707 GAGTTT-TGGGTAGGAGTTGTAGCTTAAGGTATGAGCTTTACCCTTTTCTTAGAAGGTAA 765 |||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 737 GAGTTTGTGG-TAGGAGTTGTAGCTTTAGGTATGAGCTTTACCCTTTTCTTAGAAGGTAA 795 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37173268780 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5