BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896853
Length=765
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29040.1 | Symbols: | Domain of unknown function (DUF26) | ... 1033 0.0
AT3G21970.1 | Symbols: | Domain of unknown function (DUF26) | ... 662 0.0
> AT3G29040.1 | Symbols: | Domain of unknown function (DUF26)
| chr3:11037461-11038440 FORWARD LENGTH=768
Length=768
Score = 1033 bits (559), Expect = 0.0
Identities = 703/772 (91%), Gaps = 11/772 (1%)
Strand=Plus/Plus
Query 1 ATGTTTTCAAATATATTGGCCGTGGTGGCTATACAA---CTCCTTATACGCAGCGTTTCT 57
|||| |||||||||||||||| ||||||| || ||| ||||||||||||| ||||||
Sbjct 1 ATGTCTTCAAATATATTGGCCATGGTGGCCATGCAACTCCTCCTTATACGCATAGTTTCT 60
Query 58 TCTCAGAACGTTACCAATGAGTATTTGAACCACCAATGCAACAACACCCAAGGGACCTAC 117
|| || |||||||| |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 61 TCCCAAAACGTTACGAATGAGTATTTGAACCACCAATGCAACAACACACAAGGGACATAC 120
Query 118 ACGCGGGGGAGTACGTTTGAGAAGAATCTCAACCAAGTCATCCATAACATCTCCCACCTT 177
|||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 121 ACGCGGGGTAGTACGTTTGAGAAGAATCTCAACCAAGTCATCCGTAACATCTCTCACCTC 180
Query 178 CATCTTCGCAACGGTTACACCTACGAA-TCCAATGTTGTGGCTTATGAAGTTAGTAAGGA 236
||||||||| |||||||||||||| || |||||||||| |||||| ||||||||||| ||
Sbjct 181 CATCTTCGCTACGGTTACACCTAC-AACTCCAATGTTGAGGCTTACGAAGTTAGTAAAGA 239
Query 237 TCCCAACATTGTCTTCGTTTTGCTCCAGTGCCGTGGTGACTCGTACGGGTCTAAGTGCCA 296
|||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 240 TCCCAACATTGTCTTCGTTTTGCTCCAGTGTCGTGGTGACTCTTACGGGTCCAAGTGCCA 299
Query 297 CTCCTGCCTCCATACAGCCCTCTCTGGGCTTCGTGAGAGATGTCCGGGAAACAGAGGAGC 356
|||||||||||| |||||| |||||||||||||||||||||||| |||||||| ||||||
Sbjct 300 CTCCTGCCTCCACACAGCCTTCTCTGGGCTTCGTGAGAGATGTCGGGGAAACAAAGGAGC 359
Query 357 AATAATATGGTACGACCAGTGTGTTTTGGAGATTTCTTCAATTAATACCAAGGGGAGGAT 416
|||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||
Sbjct 360 AATAATATGGTACGACCAATGTGTTTTGGAGATTTCTTCCGTGAATACCAAGGGGAGGAT 419
Query 417 TCGTTACGATAGTTTTTTCAATATGACCAACCTGAAGAATGTGAGTAGCGATGCGGAGCA 476
||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||
Sbjct 420 TCGTTACGATAGTTTTTTCAATATGACCAACGTGAAGAATGTGAGCAGCAATGCGGAGCA 479
Query 477 GTTTAAAAATAAAAGGAAAGATCTCTTCAACAAGCTATTGGTAAAAGCCACTAAGGATGT 536
|||||||||||||||||| ||||||||| ||||||||||| | |||||| ||||||||
Sbjct 480 GTTTAAAAATAAAAGGAAGGATCTCTTCCACAAGCTATTGTTGGGAGCCACCAAGGATGT 539
Query 537 AAGCGAAAAG-AATGGTTG-GTACGCAGTGGGTGAGACGAGGATAGGGAGAAATAAGTTG 594
|||||| | | |||| | | |||||||||||| |||||||||||||| ||||||||| ||
Sbjct 540 AAGCGACA-GCAATGAT-GCGTACGCAGTGGGGGAGACGAGGATAGGAAGAAATAAGATG 597
Query 595 TATGCAATGATGCAGTGTGCGCTAGACTTAACGCCGAACGGTTGCTATGTGTGTCTAGAA 654
|||||||||||||||||||| |||||||||||| |||| || ||||||||||||||||||
Sbjct 598 TATGCAATGATGCAGTGTGCACTAGACTTAACGACGAATGGATGCTATGTGTGTCTAGAA 657
Query 655 TGGATTACCGGTAGGTATGATAG-TTACTACTTCGACCGTAGACAAGGAGGGAGAGTTTT 713
||||||| || ||||||||||| || |||||| ||||||||||||||| |||||||||
Sbjct 658 TGGATTATAGGCAGGTATGATAGCTT-CTACTTTGACCGTAGACAAGGAACGAGAGTTTT 716
Query 714 GGGTAGGAGTTGTAGCTTAAGGTATGAGCTTTACCCTTTTCTTAGAAGGTAA 765
| ||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 717 GAGTAGGAGTTGTAGCTTAAGATATGAGCTTTACCCTTTTCTTAGGAGGTAA 768
> AT3G21970.1 | Symbols: | Domain of unknown function (DUF26)
| chr3:7742459-7743601 FORWARD LENGTH=916
Length=916
Score = 662 bits (358), Expect = 0.0
Identities = 646/780 (83%), Gaps = 40/780 (5%)
Strand=Plus/Plus
Query 12 TATATTGGCCGTGGTGGCTATACAAC-TC--CTTATACGCAGCGTTTCTTCTCAGAACGT 68
||| |||| ||||||||||||||||| || ||| ||| || |||||||| ||||||||
Sbjct 30 TATTTTGGTCGTGGTGGCTATACAACTTCTTCTTGTACACAATGTTTCTTCCCAGAACGT 89
Query 69 TACCAATGAGTATTTGAACCACCAATGCAACAACACCCAAGGGACCTACACGCGGGGGAG 128
||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 90 TACCAATGACTATTTGAACCACCAATGCAACAACACCCAAGGGAGATACACGCATGGGAG 149
Query 129 TACGTTTGAGAAGAATCTCAACCAAG-TCATCCATAACATCTCCCACCTTC-ATCTTCGC 186
||||||||||||||| |||||||||| || | ||||||||||| ||| || ||||| |
Sbjct 150 TACGTTTGAGAAGAACCTCAACCAAGTTC-TTCATAACATCTCTAACC-TCGATCTTAG- 206
Query 187 A-ACGGTTACACCTACGAATCCAATGTTGTGGCTTATGAAGTTAGTAAGGATCCCAACAT 245
| |||||||| |||||| || |||||||||||||| ||||||| ||||||||||||||
Sbjct 207 ATACGGTTACGCCTACGTCTCTAATGTTGTGGCTTACAAAGTTAGCAAGGATCCCAACAT 266
Query 246 TGTCTTCGTTTTGCTCCAGTGCCGTGGTGACTCGTACGGGTCTAAGTGCCACTCCTGCCT 305
|||||||||||||||||||||||| |||||||| | ||||| || ||||||||||||||
Sbjct 267 TGTCTTCGTTTTGCTCCAGTGCCGCGGTGACTCCTTTGGGTCCAAATGCCACTCCTGCCT 326
Query 306 CCAT-ACAGCCCTCTCTGGGCTTCGTGAGAGATGTCCGGGAAACAGAGGAGCAATAATAT 364
| | |||||| ||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 327 C-AGCACAGCCGTCTCTGGGCTTCGTGAGAGATGTCCAGGAAACAGAGGAGCAACAATAT 385
Query 365 GGTACGACCAGTGTGTTTTGGAGATTTCTTCAATTAATACCAAGGGGAGGATTCGTTACG 424
|||||||||| ||| |||||||||||||||| | || || |||||||||| | ||||
Sbjct 386 GGTACGACCAATGTCTTTTGGAGATTTCTTCGGTGGATTCCGAGGGGAGGATCCATTACA 445
Query 425 ATA-GTTTTTTCAATATGACCAA-CCTGAAGAATGTGAGTAGCGATGCGGAGCAGTTTAA 482
| | || | ||| ||||| | || || || ||| || | | |||| | | | ||| |
Sbjct 446 A-ACGTATGTTCTATATG-CAAAACCCGACGAACGTCACCAACGATCCCAAACGGTTCGA 503
Query 483 AAATAAAAGGAAAG-ATCTCTTCAACAAGCTATTGGTAAAAGCCACTAAGGAT-GTAAGC 540
| ||||||| || | ||||| || |||||||| || | ||||||| |||||| | |||
Sbjct 504 AGATAAAAG-AAGGGATCTCCTCCACAAGCTAATGCTGGAAGCCACCAAGGATAGCAAG- 561
Query 541 GAAAA-G-----AATGGT-TG--GTACGCAGTGGGTGAGACGAGGATAGGGAGAAATAAG 591
||||| | || || || ||||||||||||||||| |||||| || |||||||||
Sbjct 562 GAAAACGGCGCCAAGGGACTGTTGTACGCAGTGGGTGAGATGAGGATTGGAAGAAATAAG 621
Query 592 TTGTATGCAATGATGCAGTGTGCGCTAGACTTAACGCCGAAC-GGTTGCTATGTGTGTCT 650
||||||||||| |||||||| ||| ||||||| || || | |||||| ||||||||||
Sbjct 622 ATGTATGCAATGGTGCAGTGTACGCAAGACTTATGGCAGA-CTGGTTGCCATGTGTGTCT 680
Query 651 AGAATGGATTAC-CGG-T-AGGTATG-ATAGTTACTACTTCGACCGTAGACAAGGAGGGA 706
|||||||||||| | | | | |||| | |||| || || |||||| || ||||||||
Sbjct 681 AGAATGGATTACGCAGATGAAATATGGAGAGTT-CTTCT---ACCGTAAACCAGGAGGGA 736
Query 707 GAGTTT-TGGGTAGGAGTTGTAGCTTAAGGTATGAGCTTTACCCTTTTCTTAGAAGGTAA 765
|||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 737 GAGTTTGTGG-TAGGAGTTGTAGCTTTAGGTATGAGCTTTACCCTTTTCTTAGAAGGTAA 795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37173268780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5