BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896860
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29075.1 | Symbols: | glycine-rich protein | chr3:11051489-... 1044 0.0
> AT3G29075.1 | Symbols: | glycine-rich protein | chr3:11051489-11052694
REVERSE LENGTH=1106
Length=1106
Score = 1044 bits (565), Expect = 0.0
Identities = 780/876 (89%), Gaps = 45/876 (5%)
Strand=Plus/Plus
Query 1 ATGCCGTATTACACCAACGACGACAATGACGTCGACGATTTCACCGAATACGATCCGTTG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 66 ATGCCGTATTACACCAACGACGACAATGACGTCGACGATTTCACCGAATACGATCCGATG 125
Query 61 CCGTATAGTGGAGGCTATGACATCACCGTAACATACGGCCGCTCAATTCCACCGTCCGAC 120
|| |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 126 CCTTATAGTGGAGGCTACGACATCACCGTGACATACGGCCGTTCAATTCCACCGTCCGAC 185
Query 121 GAGACTTGTTACCCTCTCTCGTCTCGCTCCGGCGACGCCTTTGAGTATCAGCGACCTAAC 180
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 186 GAGACTTGTTACCCTCTCTCCTCTCTCTCCGGCGACGCCTTTGAGTATCAGCGACCTAAT 245
Query 181 TTCTCTTCAT-ACCACGAATCTTCTACTTATGACGACCAAGCTCTTAAAACCGAGTACAG 239
|||||||| | ||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 246 TTCTCTTC-TAACCACGATTCTTCTGCTTATGACGACCAAGCTCTTAAAACCGAGTACAG 304
Query 240 TAGCTATGCCCGACCCGGACCCATTGGATCTGGATCCGGTGGTTCTGATTTTGGCCGGAA 299
||||||||| |||||||||||| | | ||||| | ||| |||||||||||||||||
Sbjct 305 TAGCTATGCACGACCCGGACCC----G-T-TGGAT-C--TGGATCTGATTTTGGCCGGAA 355
Query 300 ACCTAATTCTGGATATGGCGGAAGAACGGAGGTTGAGTATGGCCGGAAACCAGAATCGGA 359
|||||||||||||||||| || ||||||||||||||||||||||||||| | ||||||||
Sbjct 356 ACCTAATTCTGGATATGGAGGGAGAACGGAGGTTGAGTATGGCCGGAAAACTGAATCGGA 415
Query 360 GCACGGATCTGGCTATGGTGGGAGAATTGAGAGCGATTACATGAAGCCTAGCCATGGCGG 419
||| ||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||
Sbjct 416 GCATGGATCTGGCTATGGTGGAAGAATTGAGAGCGATTACGTGAAGCCTAGCTATGGCGG 475
Query 420 TCGTAAGGATGATGATAACGATGGTCACaaaaaaaaaaGTGGTAAGGATTATGATGATga 479
|| ||||||||| | ||||||||||||||||| | ||||||||||||||||||||||
Sbjct 476 TCACGAGGATGATGGTGACGATGGTCACAAAAAACATAGTGGTAAGGATTATGATGATGG 535
Query 480 agatgagaagagtaagaagaaggagaag-a-a-gaag--g-ataagaagaaagatggtaa 533
|||||||||||||||||||||||||||| | | |||| | |||||||||||||||||||
Sbjct 536 AGATGAGAAGAGTAAGAAGAAGGAGAAGGAGAAGAAGAAGGATAAGAAGAAAGATGGTAA 595
Query 534 taactctgaagaagatgagttcaagaagaagaagaagaaagatg-agtacaaggaccatc 592
|||||||||||| |||||||| |||||||||||||||||||| | |||||||||| ||||
Sbjct 596 TAACTCTGAAGATGATGAGTTTAAGAAGAAGAAGAAGAAAGA-GCAGTACAAGGAGCATC 654
Query 593 atgatgatgat--t-atgatgagaagaagaagaagaagaaggactatgatgatgatgatg 649
||||||||||| | ||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 655 ATGATGATGATGATTATGATGAGAAGAAGAAGAAGAAGAAAGACTATAATGATGATGATG 714
Query 650 agaagaagaagaagaaag-agtatcatgatgatga-ga--agaagaagaagaagga-a-t 703
|||||||||||||||| | | ||| |||||||||| || |||||||||||||| | | |
Sbjct 715 AGAAGAAGAAGAAGAA-GCATTATAATGATGATGATGATGAGAAGAAGAAGAAGCATAAT 773
Query 704 -atca-tgatgatgatggtgataagaagaagaagcacta-tgattatgatgatgag-a-a 758
| || ||||||||||| ||| |||||||||||| | | | || ||||||||||| | |
Sbjct 774 TA-CAATGATGATGATGATGAGAAGAAGAAGAAGAAGGAGT-ATCATGATGATGAGGATA 831
Query 759 -gaagaagaagaaag-actatcatgatgatgatggtgataagaagaagtagcactatgat 816
|||||||||||| | ||||| || ||||||||| ||| ||||||||| || | || ||
Sbjct 832 AGAAGAAGAAGAA-GCACTATGATAATGATGATGATGAGAAGAAGAAGAAGAAGGATCAT 890
Query 817 --t-atgatga-ga--agaagaagaagaagaaggat 846
| ||||||| || ||||||||||||||||||||
Sbjct 891 CGTGATGATGATGATGAGAAGAAGAAGAAGAAGGAT 926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44406985948
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5