BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896869
Length=1542
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29180.1 | Symbols: | Protein of unknown function (DUF1336)... 2427 0.0
AT5G39430.1 | Symbols: | Protein of unknown function (DUF1336)... 1013 0.0
> AT3G29180.1 | Symbols: | Protein of unknown function (DUF1336)
| chr3:11148215-11151560 FORWARD LENGTH=2009
Length=2009
Score = 2427 bits (1314), Expect = 0.0
Identities = 1473/1549 (95%), Gaps = 14/1549 (1%)
Strand=Plus/Plus
Query 1 ATGGGTGGATGTGTGTCAACCCATTCAAGAGCGATTAGGCCTCGGAGGAAAGGCCGTCGT 60
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 230 ATGGGTGGATGTGTGTCAACCCATTCAAAAGCGATTAGGCCTAGGAGGAAAGGCCGTCGT 289
Query 61 AGATCTTCTAAACACTTTTCTAAAGTGTCTGATATTGTTCCTCATTCAAATATTAGAAGG 120
|||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 290 AGATCTTCCAAACACTTTTCTAAAGTGTCTGATATTGTTCCTCATGCTAATATTAGAAGG 349
Query 121 CCTAGTGACGTTGGGAGCCGCGTTTCTTTTGCTATCTCGCAAGATGATGCATGGTTTGAC 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 350 CCTAGTGACGTTGGGAGCCGAGTTTCTTTTGCTATCTCGCAAGATGATGCATGGTTTGAC 409
Query 181 TCTGTTAGTGTTCTTGATTCGGATGAGGATGAGGACTTCATCAGCTTACCTGAAGCAGAA 240
||||| |||||||||||||||||||||||||||||||| ||||||||||||| | ||||
Sbjct 410 TCTGTCAGTGTTCTTGATTCGGATGAGGATGAGGACTTTATCAGCTTACCTG-A--AGAA 466
Query 241 AACGTACCATCAGCGCCATCAGCGGGTGGTGCGAC--G-AGTAATATACCAAATGGTCAA 297
|||||||||||| |||||||||||||||||||||| | | ||||||||||||||||||
Sbjct 467 AACGTACCATCAACGCCATCAGCGGGTGGTGCGACTGGTAACAATATACCAAATGGTCAA 526
Query 298 GTAGTTCAATTTGAATCTTCTTCGTGCATT-GTGGATGGGAAAGGAAAGTACGAAGAATA 356
|||||||| |||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 527 GTAGTTCAGTTTGAATCTTCTTCGTGC-TTCGTGGATGGTAAAGGAAAGTACGAAGAATA 585
Query 357 CCACGAGACTTACTTGAAGATAGATGGGAGTAAAACCGAGAAGTTTGTGACGAAAGGGAT 416
||| |||||||||||||||||||| ||||||||| |||||||||||||| | ||||||||
Sbjct 586 CCATGAGACTTACTTGAAGATAGACGGGAGTAAAGCCGAGAAGTTTGTGTCAAAAGGGAT 645
Query 417 GTACAAGGATCCGAGTGGTCTCTCTGTTCTTACTGGAAACAACAAGAAGAAACTAATGGA 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 646 GTACAAGGATCCGAGTGGTCTCTCTGTTCTTACTGGAAACAACAAGAAGAAACTGATGGA 705
Query 477 ACATGCAAGCTTTAAAGGCTTGAAGGA-ACAGAAACGGAACTCTCAAGAGAAAACCCTGA 535
|||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 706 CCATGCAAGCTTTAAAGGCTTGAAGGATCCA-AAACGTAACTCTCAAGAGAAAACCCTGA 764
Query 536 GAACCAGTCTGAGTCGATTGATGCCAACAGTTAGTTTCAATGACAAGACTCTAAACTCAC 595
||||||| ||||| || |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 765 GAACCAGCCTGAGCCGGTTGATGCCAACAGTCAGTTTTAATGACAAGACTCTAAACTCAC 824
Query 596 CCACATCTCAGAAACGAAAATCCGCTGTTTATCGGCTTTCCTTCAAGAGGAGGTCGTGCG 655
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct 825 CCACATCTCAGAAACGAAAATCCGCTGTTTATCGGCTTTCTTTCAAAAGGAGGTCGTGTG 884
Query 656 ATGGTGAGGAAGTTACTGAGCAACGTAAGTTGTTGTACCGTCCAAAAGCGGGATTCACAA 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 ATGGTGAGGAAGTTACTGAGCAACGTAAGTTGTTGTACCGTCCAAAAGCGGGATTCACAA 944
Query 716 TTCCTTCCTCGGGCAGAGAAAAGCAGTCCAGCGGAAGTTGGTGC-GAGATACCACCTTCA 774
|||||||||||||||||||||||||||| ||||||||||||| | |||||||| ||||||
Sbjct 945 TTCCTTCCTCGGGCAGAGAAAAGCAGTCTAGCGGAAGTTGGT-CTGAGATACCGCCTTCA 1003
Query 775 ACTTTTAAACTCCGTGGAGAAACATATTTCAAAGACAAAAAGAAATCCCCAGCTCCAAAT 834
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1004 ACTTTTAAACTCCGTGGAGAAACCTATTTCAAAGACAAAAAGAAATCCCCAGCTCCAAAT 1063
Query 835 CAGTGTCCATACACTCCTATTGGCGTTGACTTGTTTGCCTGTCCAAGGAAAATTGATCAT 894
|||||||||||||||||||| || ||||||||||||| |||||||||||| |||||||||
Sbjct 1064 CAGTGTCCATACACTCCTATAGGTGTTGACTTGTTTGTCTGTCCAAGGAAGATTGATCAT 1123
Query 895 ATCGCCCAACACATCGAGCTTCCAAATATCAAAGCCGAGGCAAAGCTCCCTGCTCTTCTT 954
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1124 ATCGCCCAACACATCGAGCTTCCAAACATCAAAGCCGAGGCAAAGCTCCCTGCTCTTCTT 1183
Query 955 GTTGTCAACATTCAGTTACCAACCTATCCTGCTGCAATGTTCCTTGGCGATGGTGATGGA 1014
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1184 GTTGTCAACATTCAGTTACCAACCTATCCTGCTGCAATGTTCCTTGGGGACAGTGATGGA 1243
Query 1015 GAAGGCATGAGCATTGTACTTTACTTTAAATTAAGAGACAATTACGAAAAAGAAACCTCT 1074
||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||
Sbjct 1244 GAAGGCATGAGCATTGTACTTTATTTTAAATTACGAGACAATCACGAAAAAGAAACCTCT 1303
Query 1075 CAGCAGTATCAGGACAGCATCAAGAAACTTGTCAATGATGAGATGGAGAAGGTAAAAGGG 1134
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1304 CAGCAATATCAGGAGAGCATCAAGAAACTTGTCAATGATGAGATGGAGAAGGTAAAAGGG 1363
Query 1135 TTTGCTAAAGACAGCAACGTTGCTTTCCGTGAAAGGCTTAAGATAGTAGCTGGACTTGTT 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1364 TTTGCTAAAGACAGCAACGTTGCTTTCCGTGAAAGGCTTAAGATAGTAGCTGGACTTGTT 1423
Query 1195 AACCCCGAAGATCTAGC-CTTAAGCTCTACTGAAAAGAAGCTTGTACAGGCTTACAATGA 1253
||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||
Sbjct 1424 AACCCCGAAGATCTAGCTCT-AAGCTCGACTGAAAAGAAGCTTGTACAGGCTTACAATGA 1482
Query 1254 AAAACCCGTCCTCTCTCGTCCTCAACACAACTTCTTTAAGGGTCCAAACTACTTTGAGAT 1313
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1483 AAAACCTGTCCTCTCTCGTCCTCAACACAACTTCTTTAAGGGTCCAAACTACTTCGAGAT 1542
Query 1314 TGATTTGGATGTACATCGATTCAGCTACATATCACGAAAAGGACTTGAAGCATTCAGAGA 1373
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1543 TGATCTGGATGTACATCGATTCAGCTACATATCTCGAAAAGGACTTGAAGCATTCAGAGA 1602
Query 1374 TCGACTGAAAAACGGAACTCTTGATCTCGGCTTAACTATCCAGGCTCAAAAACCAGAAGA 1433
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1603 TCGACTAAAAAACGGAACTCTTGATCTCGGCTTAACCATCCAGGCTCAAAAACCGGAAGA 1662
Query 1434 GCTGCCGGAACAAGTCCTATGTTGTCTAAGGCTGAGCAAGATTGACTTCGTTGACCACGG 1493
||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 1663 GCTGCCGGAACAAGTCCTATGCTGTCTGAGGCTGAGCAAGATTGACTTCGTAGACCACGG 1722
Query 1494 TCAAATCCCGAGGCTTTTGATCCCGGAGGATGAGGAAAATCAAGTGTAA 1542
||| ||||| | |||||||||||||||||||| ||||| ||||||||||
Sbjct 1723 TCAGATCCCAATGCTTTTGATCCCGGAGGATGGGGAAACTCAAGTGTAA 1771
> AT5G39430.1 | Symbols: | Protein of unknown function (DUF1336)
| chr5:15775302-15777599 REVERSE LENGTH=1536
Length=1536
Score = 1013 bits (548), Expect = 0.0
Identities = 1252/1579 (79%), Gaps = 99/1579 (6%)
Strand=Plus/Plus
Query 1 ATGGGTGGATGTGTGTCAACCCATTCAAGAGCGA-TTAGGCCTCGGAGGAAAGGCCGTCG 59
|||||| |||| ||||||| ||||||||| || ||||||| || ||||||||||||||
Sbjct 1 ATGGGTACATGTATGTCAACACATTCAAGA-AGACTTAGGCCACGAAGGAAAGGCCGTCG 59
Query 60 TAGATCTTCTAAACACTTTTCTAAAGTGTCTGATATTGTTCCTCATTCAAATATTAGAAG 119
|||| ||||||| || | ||||||||||| || ||||||| |
Sbjct 60 CAGATTTTCTAAAAACATATCTAAAGTGTC------TG------------ATATTAG-AC 100
Query 120 GCCT-AGTGACGTTGGGAGCCGCGTTTCTTTTGCTATCTCGCAAGATGATGCATGGTTTG 178
|||| ||||| ||||| | || ||||||| ||| || ||| | |||||||||||||
Sbjct 101 GCCTAAGTGATGTTGGAATCCAAACCTCTTTTGATATTTCTCAAAACGATGCATGGTTTG 160
Query 179 ACTCTGT-TAGTGTTCTTGATTCGGA-TGAGGATGAGGACTTCATCAGCTTACCTGAAGC 236
| ||| | ||| || || || || | ||||| ||||| || ||| ||| ||||||
Sbjct 161 ATTCT-TCAAGTCTT-TT--CTCTGACT-CTGATGACGACTTTATTAGCCTACATGAAGC 215
Query 237 AGAAAACGTACCATCAGCGCCATCAGCGGGTGGTGCGACGAGTAATATACCAAATGGTCA 296
|| || || | | | | || |||||| | | | |||| || |||||||||||
Sbjct 216 TGATAATGT----T-TG-G---TTAGAGGGTGGCGTAATGGGTAAAATTCCAAATGGTCA 266
Query 297 AGTAGTTCAATTTGAATCTTCTTCGTGCATTGTGGATGGGAAA-GGAAAGTACGAAGAAT 355
||| ||| | ||||| ||||||| |||||||| ||| ||||| ||||| ||||||||||
Sbjct 267 AGTGGTTGAGTTTGAGGCTTCTTCATGCATTGTTGAT-GGAAATGGAAATTACGAAGAAT 325
Query 356 ACCACGAGACTTACTTGAAGATAGAT-G-GG-AGTAAAACCGAGAAGTTTGTGACG-AAA 411
|||| |||| |||||||||||| ||| | || | ||||| |||||||||| ||| | ||
Sbjct 326 ACCATGAGAGTTACTTGAAGATTGATGGCGGTAATAAAATCGAGAAGTTTATGA-GCAAC 384
Query 412 GGGATGTACAAGGATCCGAGTGGTCTCTCTGTTCTTACTGGAAACAACAAGAAGAAACT- 470
|| | || || ||| | | |||| | |||| | ||| |||||||||||||||||||||
Sbjct 385 GGTTTATATAAAGATACTAATGGTTTGTCTGGTATTATTGGAAACAACAAGAAGAAACTA 444
Query 471 AATGGAAC--AT-GCAAGCTTTAAAGGCTTGAAGGA-ACAGAAACGGAACTCTCAAGAGA 526
||| || || | ||||||||||| ||||| || || | | ||| || |||| |
Sbjct 445 AAT---ACTTATAG-TAGCTTTAAAGGATTGAAAGAGTTAG-ACCCTAACCCTAAAGA-A 498
Query 527 AAACCCTGAGAA-CCAGTCTGAGTC-GAT--TG--A-TGCCAACAGTTAGTTTCAATGAC 579
||| | | | || ||| | |||| | | | || | ||||||| ||||||||||| |||
Sbjct 499 AAAGCATTAAAATCCAATTTGAGCCGGTTGATGCCATTGCCAACGGTTAGTTTCAACGAC 558
Query 580 AAGACTCTAAACTCACCCACATCTCAGAAA-CGAAAATCCGCTGTTTATC-GGCTTTCCT 637
|| ||||| ||||| ||||||||||| ||| || || || || ||||||| || |||| |
Sbjct 559 AAAACTCTGAACTCCCCCACATCTCA-AAACCGGAAGTCAGCGGTTTATCAGG-TTTCTT 616
Query 638 TCAAGAGGAGGTCGTGCGATGGTGAGGAAGTTACTGAGCA-A---CGT----AAG-TTGT 688
||||||| || || || |||||||| |||||||| || || | ||| ||| ||||
Sbjct 617 TCAAGAGAAGATCATGTGATGGTGAAGAAGTTACCGAACATAGGTCGTCGAAAAGATTGT 676
Query 689 TGTACCGTCCAAAAGCGGGATTCACAATTCCTTCCTCGGGCAGAGAAAAGCAGTC---CA 745
|||||||||| ||||| |||| ||| ||||| | || | || ||| ||||| || ||
Sbjct 677 TGTACCGTCCCAAAGCCGGATACACGATTCCGTGCTATGTCAAAGAGAAGCA-TCAATCA 735
Query 746 GC-GGAAGTTGGTGCGAGATACCACCTTC-AACTTTTAAACTCCGTGGAGAAACATATTT 803
| ||||||||||| |||||||| || || ||| || || | ||||| ||||| |||||
Sbjct 736 TCAGGAAGTTGGTGTGAGATACCTCCATCAAAC-TTGAAGTTACGTGGCGAAACTTATTT 794
Query 804 CAAAGACAAAAAGAAATC-CCCAGCTCCAAATCAGTGTCCATACACTCCTATTGGCGTTG 862
|||||| ||| |||| | ||| |||||||| || |||||||||||||| ||||| ||||
Sbjct 795 CAAAGA-TAAACGAAAACACCCGGCTCCAAACCAATGTCCATACACTCCAATTGGTGTTG 853
Query 863 ACTTGTTTGCCTGTCCAAGGAAAATTGATCATATCGCCCAACACATCGAGCTTCCAAATA 922
||||||||| ||||||||||| ||||||||||| ||||||||||| |||||||| || |
Sbjct 854 ACTTGTTTGTGTGTCCAAGGAAGATTGATCATATAGCCCAACACATTGAGCTTCCCAACA 913
Query 923 TCAAAGCCGAGGCAAAGCTCCCTGCTCTTCTTGTTGTCAACATTCAGTTACCAACCTATC 982
||||||| | |||||| |||||||||||||| |||||||||| ||||| ||||| ||||
Sbjct 914 TCAAAGCTGTGGCAAACCTCCCTGCTCTTCTAATTGTCAACATCCAGTTGCCAACTTATC 973
Query 983 CTGCTGCAATGTTCCTTGGCGATGGTGATGGAGAAGGCATGAGCATTGTACTTTACTTTA 1042
| || |||||||| || || ||| || | |||||||||||||||||||||||||||||||
Sbjct 974 CAGCCGCAATGTTTCTCGGTGATAGTAACGGAGAAGGCATGAGCATTGTACTTTACTTTA 1033
Query 1043 AATTAAGAGACAATTACGAAAAA-GAAACCTCTCAGCAGTATCAGGACAGCATCAAGAAA 1101
|| || |||| |||| | ||||| |||| |||||| || || || |||||||||||||||
Sbjct 1034 AACTACGAGAAAATTTC-AAAAATGAAATCTCTCAACAATACCAAGACAGCATCAAGAAA 1092
Query 1102 CTTGTC-AATGATGAGATGGAGAAGGTAAAAGGGTTTGCTAAAGACAGCAACGTTGC-TT 1159
|| || || ||||||||||| || || ||||||||||| ||||||| || |||| | ||
Sbjct 1093 CTAGTGGAA-GATGAGATGGAAAAAGTTAAAGGGTTTGCAAAAGACAACATCGTTCCGTT 1151
Query 1160 TCCGTGAAAGGCTTAAGATAGTAGCTGGACTT-GTTAACCCCGAAGATCT-AGCCTTAAG 1217
|| ||||||||||||| |||||||| ||| || |||||||| || || || || || | |
Sbjct 1152 TC-GTGAAAGGCTTAAAATAGTAGCCGGA-TTAGTTAACCCAGATGAACTCAGTCTGA-G 1208
Query 1218 CTCTACTGAAAAGAAGCTTGTACAGGCTTACAATGAAAAACCCGTCCTCTCTCGTCCTCA 1277
|||||||||||||||||| |||| |||||||||||||||||||| || ||||| |||||
Sbjct 1209 TTCTACTGAAAAGAAGCTTATACAAGCTTACAATGAAAAACCCGTGCTTTCTCGCCCTCA 1268
Query 1278 ACACAACTTCTTTAAGGGTCCAAACTACTTTGAGATTGATTTGGATGTACATCGATTCAG 1337
|||||||||||| |||||||| ||||||||||||||||||||||| || ||||| || ||
Sbjct 1269 ACACAACTTCTTCAAGGGTCCTAACTACTTTGAGATTGATTTGGACGTGCATCGGTTTAG 1328
Query 1338 CTACATATCACGAAAAGGACTTGAAGCATTCAGAGATCGACTGAAAAACGGAACTCTTGA 1397
|||| | ||| ||||||| ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1329 CTACCTTTCAAGAAAAGGGCTTGAAGCATTCAGAGATCGACTCAAAAATGGAACTCTTGA 1388
Query 1398 TCTCGGCTTAACTATCCAGGCTCAAAAACCAGAAGAGCTGCCGGAACAAG-TCCTATGTT 1456
|||||||||||||||||| |||||||||| ||| ||| | || ||| ||| |||||||||
Sbjct 1389 TCTCGGCTTAACTATCCAAGCTCAAAAACAAGAGGAGTTACCAGAA-AAGGTCCTATGTT 1447
Query 1457 GTCTAAGGCTGAGCAAGATTGACTTCGTTGACCACGGTCAAATCCCGAGGCTTTTGATCC 1516
||||||| |||||||||||||||| |||||| |||||||||| || | ||||| || |
Sbjct 1448 GTCTAAGATTGAGCAAGATTGACTTTGTTGACAACGGTCAAATTCCTACACTTTTAATTC 1507
Query 1517 CGGAGGATGAGGAAAATCA 1535
| || || |||| |||||
Sbjct 1508 CTGAAGA--AGGAGAATCA 1524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76104026220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5