BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg896891

Length=546
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G37920.1 | Symbols: emb1513 | copper ion transmembrane trans...   294    5e-79


> AT2G37920.1 | Symbols: emb1513 | copper ion transmembrane transporters 
| chr2:15868580-15870071 REVERSE LENGTH=1398
Length=1398

 Score =  294 bits (159),  Expect = 5e-79
 Identities = 260/303 (86%), Gaps = 30/303 (10%)
 Strand=Plus/Plus

Query  4    TTTGATCTATGGACTGATAGAGATGGTCCTCAATTGTTTGAGAGTGTTGATGATTTGCCT  63
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  462  TTTGATTTATGGACTGATAGAGATGGTCCTCAATTGTTTGAGAGTGTTGATGATTTGCCT  521

Query  64   TCTGCTAGGTTTTTTCCTAAAGGTGTTGTTCATAGTGTCAAACCTTATGGTAGATTATCA  123
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  522  TCTGCTAGGTTTTTTCCTAAAGGTGTTGTTCATAGTGTTAAACCTTATGGTAGATTATCA  581

Query  124  TCAACCTCTGTTGTTGATGGTGATTCTGATGGTGAAGTGAGTGAGGTAAAAGATGAAGAA  183
            || | |||||||||||||| || |   ||||   | |  |||||||| ||||||||||||
Sbjct  582  TCTAGCTCTGTTGTTGATGATGGT---GATG---A-G--AGTGAGGTTAAAGATGAAGAA  632

Query  184  ATTGGGAAGAAGCTACGTGGTCGTAGGGGGAGGAATAGATTTGGTGTCATGGGGATAGAG  243
            |||||||||||| ||||||||||||||| |||||| |||   ||||  |||   || | |
Sbjct  633  ATTGGGAAGAAGTTACGTGGTCGTAGGGTGAGGAAGAGA---GGTG--ATG---AT-G-G  682

Query  244  AGAGGTGAAGGAGGTAAGAGGAGGATTGAGAATCGTGTTAATGGTGGGAGATTGAGAAAT  303
            || | | ||| ||| | | | |   | || ||||||| ||||||||||||||||||||||
Sbjct  683  AG-G-T-AAG-AGG-A-G-G-AC--T-GAAAATCGTGGTAATGGTGGGAGATTGAGAAAT  731

Query  304  GGA  306
            |||
Sbjct  732  GGA  734



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26171990587


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5