BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896903
Length=774
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29365.1 | Symbols: ATEXPA19, EXP19, ATEXP19, ATHEXP ALPHA 1... 870 0.0
> AT3G29365.1 | Symbols: ATEXPA19, EXP19, ATEXP19, ATHEXP ALPHA
1.21P, EXPA19 | member of Alpha-Expansin Gene Family. Naming
convention from the Expansin Working Group (Kende et al, 2004.
Plant Mol Bio) | chr3:11274127-11274967 FORWARD LENGTH=841
Length=841
Score = 870 bits (471), Expect = 0.0
Identities = 574/624 (92%), Gaps = 6/624 (1%)
Strand=Plus/Plus
Query 155 AAGGAGCATGTGGTTACGGGGATCTATTCAAAGAAGGTTACGGCTTAGAGACGGCGGCGC 214
||||||||||||||||||| |||||||||||| ||||||||||||||||||| || || |
Sbjct 216 AAGGAGCATGTGGTTACGGAGATCTATTCAAACAAGGTTACGGCTTAGAGACAGCTGCAC 275
Query 215 TAAGCACGGCTCTTTTCAACAATGGCCAAACTTGTGGTGCTTGTTTCGAGCTCATGTGTG 274
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 276 TAAGCACTGCTCTTTTCAACAATGGCCAGACTTGTGGTGCTTGTTTCGAGCTCATGTGTG 335
Query 275 TGAACTCTAAA-TGGTGCAAACCAAACGCTGGTTCAATCAAAATCACAGCCACTAATTTC 333
| | ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 TTAGCTC-AAAGTGGTGCAAACCAAACGCTGGTTCAATCAAAATCACAGCCACTAATTTT 394
Query 334 TGCCCACCAAATTATGACGAACCGGTTCAATACCATTGGTGCAACCCTCCTAACAAGCAC 393
||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 395 TGCCCACCAAATTATCAAGAACCGGTTCAGTACCATTGGTGCAACCCTCCTAACAAGCAC 454
Query 394 TTTGATCTATCGATGAAAATGTT--CACTTCGATGGCTGAGTACAAAGGAGGGATAGTTC 451
||||||||||| ||||||||||| |||| || ||||||||||| || |||||||||||
Sbjct 455 TTTGATCTATCAATGAAAATGTTTTCACTACGGTGGCTGAGTACCGAGCAGGGATAGTTC 514
Query 452 CGGTGAAGTTCAGGCGAGTGATGTGTCATAAGAGAGGTGGTGTGAGGTTTGAGATTAAGG 511
||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 515 CGGTGAAGTTCCGGCGAGTGGCCTGTCATAAGAGAGGTGGTGTTAGGTTTGAGATTAAGG 574
Query 512 GCAATCCTTATTTTATCATGGTTTTGGTGTATAACGTTGGAGGCGCAGGAGATGTGAATA 571
|||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||| ||
Sbjct 575 GCAATCCTTATTATATCATGGTTTTGGTTTATAACGTTGGAGGGGCAGGAGATGTGAGTA 634
Query 572 ACGTTGAAATTAGAGGGCATAAGAGTAATTGGATCGTTATGAAGAGGAATTGGGGGCAAA 631
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 635 ACGTTGAAATTAGAGGGCAAAAGAGTAATTGGATCGTTATGAAGAGAAATTGGGGGCAAA 694
Query 632 TTTGGAATACTGGTGTGGATTTGGTTGGACAAAGGCTCTCGTTTGTGGTTCGGACCAGTG 691
||||| |||| ||| | ||||||||||||||||| ||||||||| | ||||||||||| |
Sbjct 695 TTTGGGATACCGGTTTAGATTTGGTTGGACAAAGTCTCTCGTTTATAGTTCGGACCAGCG 754
Query 692 ATGGTAGGAGCATGACGTTCTTTAATGTTGCGCCTGCGAGTTGGGGGTTCGGTCAAACTT 751
||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||
Sbjct 755 ATGGTAGGAGCATGACGTTCTTTAATGTTGCGCCTCCGAATTGGGGTTTCGGTCAAACTT 814
Query 752 TTGAAGCAAAA-CTGAACTTTTAG 774
||||||||| | ||| ||||||
Sbjct 815 ACGAAGCAAAATC-GAATTTTTAG 837
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37625376103
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5